View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13998_low_27 (Length: 251)
Name: NF13998_low_27
Description: NF13998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13998_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 21611757 - 21611533
Alignment:
| Q |
18 |
ataagatatagatttatataatgttaacaccgacttacacgatcgtcttcaaaacatgtaattgtttaacaccnnnnnnngtaacaagttggagtatccc |
117 |
Q |
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| T |
21611757 |
ataagatatagatttatataatgttaacaacgacttacacgatcgtcttcaaaacatgtaattgtttaacacctttttttgtatcgagttggagtatccc |
21611658 |
T |
|
| Q |
118 |
ttgtactccctactaatataattgtttattnnnnnnnttgaacgacgtacaaaatgtatcaaacttannnnnnnnnnnnnnnnnnatcaaatataacaaa |
217 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21611657 |
ttgtactccctactaatataattgtttattaaaaaaattgaacgacgtacaaaatgtatcaaactta--tttttttattttttttatcaaatataacaaa |
21611560 |
T |
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| Q |
218 |
ctattgaccttagcaaatatttcccta |
244 |
Q |
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||||||||||||||||||||||||||| |
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| T |
21611559 |
ctattgaccttagcaaatatttcccta |
21611533 |
T |
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