View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13998_low_3 (Length: 630)

Name: NF13998_low_3
Description: NF13998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13998_low_3
NF13998_low_3
[»] chr8 (4 HSPs)
chr8 (17-229)||(40907880-40908094)
chr8 (183-236)||(14186920-14186973)
chr8 (19-67)||(10338547-10338595)
chr8 (175-239)||(22956445-22956509)
[»] chr7 (9 HSPs)
chr7 (159-252)||(37714644-37714737)
chr7 (157-252)||(46881344-46881439)
chr7 (169-251)||(32571721-32571803)
chr7 (177-242)||(10623973-10624038)
chr7 (27-67)||(44482594-44482634)
chr7 (157-236)||(21954679-21954758)
chr7 (157-252)||(38277009-38277104)
chr7 (163-236)||(5436048-5436121)
chr7 (139-186)||(2622829-2622877)
[»] chr3 (4 HSPs)
chr3 (152-236)||(20044712-20044796)
chr3 (157-236)||(47733746-47733825)
chr3 (139-211)||(50460396-50460469)
chr3 (160-213)||(53293276-53293329)
[»] chr5 (3 HSPs)
chr5 (176-236)||(18573500-18573561)
chr5 (165-236)||(39915674-39915745)
chr5 (152-236)||(17523378-17523462)
[»] chr6 (8 HSPs)
chr6 (161-236)||(16360902-16360977)
chr6 (177-236)||(3358952-3359011)
chr6 (160-214)||(6127511-6127565)
chr6 (154-236)||(16338161-16338243)
chr6 (152-237)||(8978596-8978681)
chr6 (159-196)||(28943491-28943528)
chr6 (152-236)||(1915042-1915126)
chr6 (19-67)||(23637830-23637878)
[»] chr4 (6 HSPs)
chr4 (157-236)||(24789370-24789449)
chr4 (157-236)||(24818810-24818889)
chr4 (157-214)||(18995489-18995546)
chr4 (157-236)||(22621612-22621691)
chr4 (157-223)||(45756818-45756884)
chr4 (184-236)||(13169329-13169381)
[»] chr1 (8 HSPs)
chr1 (157-239)||(46930273-46930355)
chr1 (157-238)||(26097866-26097947)
chr1 (184-236)||(29551637-29551689)
chr1 (165-236)||(31427019-31427090)
chr1 (157-236)||(47551276-47551355)
chr1 (166-236)||(29069711-29069781)
chr1 (157-236)||(50107774-50107855)
chr1 (176-236)||(13999147-13999207)
[»] scaffold0238 (1 HSPs)
scaffold0238 (157-234)||(15541-15618)
[»] chr2 (9 HSPs)
chr2 (412-452)||(2763667-2763707)
chr2 (152-236)||(7581943-7582027)
chr2 (152-236)||(13548757-13548841)
chr2 (165-236)||(5171977-5172047)
chr2 (177-236)||(17792655-17792714)
chr2 (157-208)||(19686267-19686318)
chr2 (140-222)||(43696959-43697042)
chr2 (166-236)||(8027867-8027937)
chr2 (157-238)||(11580991-11581072)
[»] scaffold0886 (1 HSPs)
scaffold0886 (183-234)||(3628-3679)
[»] scaffold0007 (1 HSPs)
scaffold0007 (157-236)||(201912-201991)
[»] scaffold0006 (1 HSPs)
scaffold0006 (183-234)||(35854-35905)
[»] scaffold0112 (1 HSPs)
scaffold0112 (27-67)||(25236-25276)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 40908094 - 40907880
Alignment:
Q  17 ttaattcaattttgttaaaagcaaaaaggatgaacatgtg--aataaactcacgtatcaatgctaaaaacacaagacgacaatgtgtacatatgcctgca 114  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40908094 ttaattcaattttgttaaaagcaaaaaggatgaacatgtgtgaataaactcacgtatcaatgctaaaaacacaagacgacaatgtgtacatatgcctgca 40907995  T
Q  115 aaaatgtatatattcatgcgtttagaatactcattcatcggttctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40907994 aaaatgtatatattcatgcgtttagaatactcattcatcggttctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaat 40907895  T
Q  215 tttacaaccttaatc 229  Q
    |||||||||||||||    
T  40907894 tttacaaccttaatc 40907880  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 14186973 - 14186920
Alignment:
Q  183 attgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    |||||||||||||  | |||||||||||||||||| |||||| |||||||||||    
T  14186973 attgattgaatttacagttgatcaaaactaatttttcaacctgaatcaaataaa 14186920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 10338547 - 10338595
Alignment:
Q  19 aattcaattttgttaaaagcaaaaaggatgaacatgtgaataaactcac 67  Q
    ||||||| |||| ||||| ||||||||||||| ||||||| ||||||||    
T  10338547 aattcaaatttgctaaaaacaaaaaggatgaatatgtgaacaaactcac 10338595  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 22956445 - 22956509
Alignment:
Q  175 tcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaatat 239  Q
    ||||||||| |||||| || |  ||||||||||||||||||||  ||| | ||||||||||||||    
T  22956445 tcaaagttaatgattggatctacatttgatcaaaactaattttttaacttgaatcaaataaatat 22956509  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 37714737 - 37714644
Alignment:
Q  159 tgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaatattgcagtaaaacgg 252  Q
    ||||| ||||||||||| || |||||||||||||| || | |||||||||| |||| || |||||| ||||||||||| |||||| ||| ||||    
T  37714737 tgcaacgttgacgacgtaaatgttattgattgaatctgcacttgatcaaaattaatctttcaacctgaatcaaataaacattgcactaagacgg 37714644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 46881439 - 46881344
Alignment:
Q  157 tctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaatattgcagtaaaacgg 252  Q
    ||||||| |||||||| |  ||| | |||||||||||||| | ||||||||||||||| || |||||| ||||||||||| |||||| ||| ||||    
T  46881439 tctgcaacgttgacgatgcaaaaatcattgattgaatttgaacttgatcaaaactaatatttcaacctaaatcaaataaacattgcactaagacgg 46881344  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 32571721 - 32571803
Alignment:
Q  169 acgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaatattgcagtaaaacg 251  Q
    |||||||||||  | |||||||||| || ||||| ||||||||||||||  ||||| ||||||||||| || ||| |||||||    
T  32571721 acgacgtcaaaaattttgattgaatctgcatttgctcaaaactaattttttaacctgaatcaaataaacatcgcattaaaacg 32571803  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 10624038 - 10623973
Alignment:
Q  177 aaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaatattgc 242  Q
    ||||| |||||||||||||||| ||||||||| ||||| || |||| | ||||||||||| |||||    
T  10624038 aaagtcattgattgaatttgtacttgatcaaagctaatctttcaacttgaatcaaataaacattgc 10623973  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 44482594 - 44482634
Alignment:
Q  27 tttgttaaaagcaaaaaggatgaacatgtgaataaactcac 67  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  44482594 tttgctaaaaacaaaaaggatgaacatgtgaataaactcac 44482634  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 21954679 - 21954758
Alignment:
Q  157 tctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    ||||||| |||||||||| |||||| |||||| | ||||| | ||| ||||| ||||| || |||||| |||||||||||    
T  21954679 tctgcaacgttgacgacgccaaagtcattgatcggatttgcacttgctcaaagctaatctttcaacctgaatcaaataaa 21954758  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 38277104 - 38277009
Alignment:
Q  157 tctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaatattgcagtaaaacgg 252  Q
    ||||||| |||||||||| |||||| |||||| | ||||| | ||| ||||| ||||| || |||| | ||||||||||| |||||| ||| ||||    
T  38277104 tctgcaacgttgacgacgccaaagtcattgatcggatttgaacttgctcaaagctaatatttcaacatgaatcaaataaacattgcactaagacgg 38277009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 5436121 - 5436048
Alignment:
Q  163 atgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    |||||||||||| |||||| ||| ||||||| || | ||  ||||||||| | || ||||||||||||||||||    
T  5436121 atgttgacgacgccaaagtcattcattgaatctgcactttctcaaaactattctttcaaccttaatcaaataaa 5436048  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 2622877 - 2622829
Alignment:
Q  139 gaatactcat-tcatcggttctgcaatgttgacgacgtcaaagttattg 186  Q
    |||||||||| || |||| |||||||||||||||||| |||||||||||    
T  2622877 gaatactcatgtcttcggatctgcaatgttgacgacgccaaagttattg 2622829  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 20044712 - 20044796
Alignment:
Q  152 tcggttctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    |||| ||||||| ||||||||||||||| | ||||||||||| || | ||| ||||||||||| || |||||| |||||||||||    
T  20044712 tcggatctgcaacgttgacgacgtcaaaatgattgattgaatatgcacttgctcaaaactaatcttccaacctgaatcaaataaa 20044796  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 47733746 - 47733825
Alignment:
Q  157 tctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    |||||||  ||||||||| |||||| ||||||||||| || ||||| ||||||||||| || |||||| |||||||||||    
T  47733746 tctgcaactttgacgacgccaaagtcattgattgaatatgcatttgctcaaaactaatatttcaacctgaatcaaataaa 47733825  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 50460469 - 50460396
Alignment:
Q  139 gaatactcat-tcatcggttctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaact 211  Q
    |||||||||| || |||| | ||||| |||||| ||||||||||||||||||| ||||| ||| |||| |||||    
T  50460469 gaatactcatgtcttcggatttgcaacgttgacaacgtcaaagttattgattggatttgcattggatcgaaact 50460396  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 53293329 - 53293276
Alignment:
Q  160 gcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaa 213  Q
    |||| ||||||||||||||| | ||||||||||| || | ||||||||||||||    
T  53293329 gcaacgttgacgacgtcaaaatcattgattgaatatgcacttgatcaaaactaa 53293276  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 18573561 - 18573500
Alignment:
Q  176 caaagttattgattgaatttgtattt-gatcaaaactaattttacaaccttaatcaaataaa 236  Q
    |||||||||||||||||| || |||| |||||||||||||||| |||||| |||||||||||    
T  18573561 caaagttattgattgaatctgcattttgatcaaaactaatttttcaacctgaatcaaataaa 18573500  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 39915745 - 39915674
Alignment:
Q  165 gttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    |||||||||||||||||||||||||| || || | ||| ||||| ||||| || |||||| ||| |||||||    
T  39915745 gttgacgacgtcaaagttattgattggatatgcacttgctcaaagctaatctttcaacctgaataaaataaa 39915674  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 17523378 - 17523462
Alignment:
Q  152 tcggttctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    |||| ||||||| |||||| | |  ||||| ||| |||||||||| | ||||||||||||||| || | |||| |||||||||||    
T  17523378 tcggatctgcaacgttgacaatgcaaaagtcattaattgaatttgcacttgatcaaaactaatctttcgacctgaatcaaataaa 17523462  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 16360902 - 16360977
Alignment:
Q  161 caatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    |||||| |||||||||||| | ||||||| |||||| | ||  |||||||||||||| |||||| |||||||||||    
T  16360902 caatgtcgacgacgtcaaaatcattgattaaatttgcacttactcaaaactaatttttcaacctaaatcaaataaa 16360977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 3359011 - 3358952
Alignment:
Q  177 aaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    |||||||||||||| || || ||||||||||||||| | || |||||| |||||||||||    
T  3359011 aaagttattgattggatatgcatttgatcaaaactactctttcaacctgaatcaaataaa 3358952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 6127565 - 6127511
Alignment:
Q  160 gcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaat 214  Q
    |||| ||||||||||  ||||| ||||||||||| |||||||| |||||||||||    
T  6127565 gcaacgttgacgacgctaaagtcattgattgaatatgtatttgctcaaaactaat 6127511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 16338161 - 16338243
Alignment:
Q  154 ggttctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    |||| ||||| || |||||||| ||||| |||||||||||||| |  |  ||||||||||| || |||||| |||||||||||    
T  16338161 ggttttgcaacgtcgacgacgttaaagtcattgattgaatttgcacctactcaaaactaatctttcaacctaaatcaaataaa 16338243  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 8978596 - 8978681
Alignment:
Q  152 tcggttctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaat 237  Q
    |||| ||||||| |||||||| |  ||| | ||||||||||| || | ||||||||||||||| || |||| || |||||||||||    
T  8978596 tcggatctgcaacgttgacgatgcaaaaatcattgattgaatatgcacttgatcaaaactaatctttcaactttgatcaaataaat 8978681  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 28943528 - 28943491
Alignment:
Q  159 tgcaatgttgacgacgtcaaagttattgattgaatttg 196  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  28943528 tgcaatgttgacaacgtcaaagtcattgattgaatttg 28943491  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 1915042 - 1915126
Alignment:
Q  152 tcggttctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    |||| |||||||| |||||||||||||| | ||| | |||||||| | ||| ||| | ||||| || |||||| |||||||||||    
T  1915042 tcggatctgcaatattgacgacgtcaaaatcattaactgaatttgcacttgttcatagctaatctttcaacctgaatcaaataaa 1915126  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 23637830 - 23637878
Alignment:
Q  19 aattcaattttgttaaaagcaaaaaggatgaacatgtgaataaactcac 67  Q
    |||||||||||| ||||| |||||| |||||| ||||||| ||||||||    
T  23637830 aattcaattttgctaaaaacaaaaatgatgaatatgtgaacaaactcac 23637878  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 24789449 - 24789370
Alignment:
Q  157 tctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    ||||||| |||||||| || ||||| |||| |||||| || ||||||||||| ||||| || |||||| |||||||||||    
T  24789449 tctgcaacgttgacgaagtaaaagtcattggttgaatctgcatttgatcaaagctaatctttcaacctgaatcaaataaa 24789370  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 24818810 - 24818889
Alignment:
Q  157 tctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    ||||||| |||||||| || ||||| |||| |||||| || ||||||||||| ||||| || |||||| |||||||||||    
T  24818810 tctgcaacgttgacgaagtaaaagtcattggttgaatctgcatttgatcaaagctaatctttcaacctgaatcaaataaa 24818889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 18995546 - 18995489
Alignment:
Q  157 tctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaat 214  Q
    ||||||| ||||||||||  ||||| ||||||||||| |||| |||||||||||||||    
T  18995546 tctgcaacgttgacgacgcaaaagtcattgattgaatctgtacttgatcaaaactaat 18995489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 22621691 - 22621612
Alignment:
Q  157 tctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    ||||||| |||||||||||||||||  ||||||  ||||| | ||| | ||||||||| || |||||| |||||||||||    
T  22621691 tctgcaacgttgacgacgtcaaagtctttgattagatttgcacttgttaaaaactaatctttcaacctgaatcaaataaa 22621612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 45756884 - 45756818
Alignment:
Q  157 tctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaacc 223  Q
    ||||||||||||||||   |||||| ||||||||||| || ||||| ||||||||||| || |||||    
T  45756884 tctgcaatgttgacgataccaaagtcattgattgaatctgaatttgctcaaaactaatatttcaacc 45756818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 13169329 - 13169381
Alignment:
Q  184 ttgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    ||||||||||||| | ||||||||||||||| || ||| || |||||||||||    
T  13169329 ttgattgaatttgcacttgatcaaaactaatctttcaatctgaatcaaataaa 13169381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 46930355 - 46930273
Alignment:
Q  157 tctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaatat 239  Q
    ||||||| ||| ||||||||||||||||| |||||||||||| ||| || ||  |||| || |||| | ||||||||||||||    
T  46930355 tctgcaacgttaacgacgtcaaagttattaattgaatttgtacttgttcgaagttaatctttcaacataaatcaaataaatat 46930273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 26097866 - 26097947
Alignment:
Q  157 tctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaata 238  Q
    ||||||||||||||||||  ||||| ||| || |||| || | ||| ||||| |||||||| |||||| |||||||||||||    
T  26097866 tctgcaatgttgacgacgcaaaagtcattaatggaatctgcacttgctcaaagctaatttttcaacctgaatcaaataaata 26097947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 29551637 - 29551689
Alignment:
Q  184 ttgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    |||||||||| || | ||||||||||||||| || ||||||||||||||||||    
T  29551637 ttgattgaatatgcacttgatcaaaactaatatttcaaccttaatcaaataaa 29551689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 31427019 - 31427090
Alignment:
Q  165 gttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    ||||||||||  |||||||||||||||| ||| | |||||||||  |||| || |||||| |||||||||||    
T  31427019 gttgacgacgcaaaagttattgattgaagttgcacttgatcaaagttaatctttcaacctgaatcaaataaa 31427090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 47551355 - 47551276
Alignment:
Q  157 tctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    ||||||| ||||||||||||||||| |||||||| || || | ||| ||||| ||||| || |||||| |||||| ||||    
T  47551355 tctgcaacgttgacgacgtcaaagtcattgattggatctgcacttgctcaaagctaatctttcaacctaaatcaattaaa 47551276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 29069711 - 29069781
Alignment:
Q  166 ttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    |||| ||||||||||| ||||||||||| || | |||||||||| |||| || ||| || |||||||||||    
T  29069711 ttgaagacgtcaaagtcattgattgaatatgcacttgatcaaaattaatctttcaatctgaatcaaataaa 29069781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 50107774 - 50107855
Alignment:
Q  157 tctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaac--taattttacaaccttaatcaaataaa 236  Q
    |||||||||||||||||   ||||| |||||||||||||| | ||||||||| |  ||||||| |||| | |||||||||||    
T  50107774 tctgcaatgttgacgacacaaaagtcattgattgaatttgcacttgatcaaagctataatttttcaacataaatcaaataaa 50107855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 13999207 - 13999147
Alignment:
Q  176 caaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    |||||| ||||||||||| || ||||| |||||  |||| ||||||||| |||||||||||    
T  13999207 caaagtcattgattgaatctgcatttgctcaaagttaatcttacaacctgaatcaaataaa 13999147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 15541 - 15618
Alignment:
Q  157 tctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaata 234  Q
    ||||||| ||||||||||  ||| | |||| |||||| |||| ||||||||||||||| || |||||| |||||||||    
T  15541 tctgcaacgttgacgacgcaaaactcattggttgaatctgtacttgatcaaaactaatatttcaacctgaatcaaata 15618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 412 - 452
Target Start/End: Original strand, 2763667 - 2763707
Alignment:
Q  412 aaagaagaagaaaattgatgacggttaggatttaacaagaa 452  Q
    |||||||||||||| |||||||||||| |||||||||||||    
T  2763667 aaagaagaagaaaaatgatgacggttaagatttaacaagaa 2763707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 7581943 - 7582027
Alignment:
Q  152 tcggttctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    |||| ||| ||| |||||||||||||||||  ||||||||||||| | ||| |||||  |||| || |||||| |||||||||||    
T  7581943 tcggatctacaacgttgacgacgtcaaagtcgttgattgaatttgcacttgctcaaagataatatttcaacctgaatcaaataaa 7582027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 13548757 - 13548841
Alignment:
Q  152 tcggttctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    |||| ||||||| |||||| | |  ||||| ||||||||||| || ||||||||||| ||||| || |||||| |||||||||||    
T  13548757 tcggatctgcaacgttgacaatgcaaaagtcattgattgaatctgcatttgatcaaagctaatctttcaacctgaatcaaataaa 13548841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 5172047 - 5171977
Alignment:
Q  165 gttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    ||||||||||||||||| ||||| ||||| || ||||||||||| ||||| || |||||| ||| |||||||    
T  5172047 gttgacgacgtcaaagtcattgaatgaatctgcatttgatcaaagctaatctt-caacctgaataaaataaa 5171977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 17792714 - 17792655
Alignment:
Q  177 aaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    ||||| ||||||||||| || ||||||||||||||||| || |||| | |||||||||||    
T  17792714 aaagtcattgattgaatctgcatttgatcaaaactaatctttcaacatgaatcaaataaa 17792655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 19686267 - 19686318
Alignment:
Q  157 tctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaa 208  Q
    ||||||| |||||| || ||||||| ||||||||||||||||||| ||||||    
T  19686267 tctgcaacgttgacaacatcaaagtcattgattgaatttgtatttaatcaaa 19686318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 43697042 - 43696959
Alignment:
Q  140 aatactcat-tcatcggttctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaac 222  Q
    ||||||||| || |||| |||||||| |||| ||  ||||||| |||||||||||||| | || ||||||||||||||| ||||    
T  43697042 aatactcatgtcttcggatctgcaattttgatgatatcaaagtcattgattgaatttgcacttaatcaaaactaatttttcaac 43696959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 8027867 - 8027937
Alignment:
Q  166 ttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    ||||||||  ||||||||||| |||||| || | ||| |||||||||||||| |||||| ||| |||||||    
T  8027867 ttgacgacaccaaagttattgtttgaatctgcaattgttcaaaactaatttttcaacctaaattaaataaa 8027937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 11580991 - 11581072
Alignment:
Q  157 tctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaata 238  Q
    ||||||| |||||||||   ||| | |||||||||||||| | ||||| ||| ||||| || |||||| |||||||||||||    
T  11580991 tctgcaacgttgacgacacaaaaatcattgattgaatttgcacttgatgaaacctaatctttcaacctgaatcaaataaata 11581072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 3628 - 3679
Alignment:
Q  183 attgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaata 234  Q
    ||||||||||| |||| ||||||||||||||| || |||||| |||||||||    
T  3628 attgattgaatctgtacttgatcaaaactaatatttcaacctgaatcaaata 3679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 201912 - 201991
Alignment:
Q  157 tctgcaatgttgacgacgtcaaagttattgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaataaa 236  Q
    |||||||||||||| ||| |||| | |||||||||||||  | ||| ||||| ||||| || |||||| |||||||||||    
T  201912 tctgcaatgttgacaacgccaaaatcattgattgaattttcacttgttcaaagctaatatttcaacctgaatcaaataaa 201991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 35905 - 35854
Alignment:
Q  183 attgattgaatttgtatttgatcaaaactaattttacaaccttaatcaaata 234  Q
    ||||||||||| |||| ||||||||||||||| || |||||| |||||||||    
T  35905 attgattgaatctgtacttgatcaaaactaatatttcaacctgaatcaaata 35854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 25236 - 25276
Alignment:
Q  27 tttgttaaaagcaaaaaggatgaacatgtgaataaactcac 67  Q
    |||| ||||| ||||||||||||| ||||||||||||||||    
T  25236 tttgctaaaaacaaaaaggatgaatatgtgaataaactcac 25276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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