View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13998_low_34 (Length: 227)
Name: NF13998_low_34
Description: NF13998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13998_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 213
Target Start/End: Original strand, 37146823 - 37147030
Alignment:
| Q |
7 |
atcatcccacaaagaggtattctagcattcttgttgacatggttaagtacagattcgagcattttaccaccaacattgtcaaggtaaacatcaataccat |
106 |
Q |
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| T |
37146823 |
atcatcccacaaagaggtattctagcatttttgttcacatggttaagtacagattcgagcattttaccaccaacattgtcaaggtaaacatcaataccat |
37146922 |
T |
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| Q |
107 |
cagggaaatacctgcaaaattctagtgaaaatatcagaatattaacttaattttgaaaaactaaaatatatattagtcagtta-ggtagctaattttaat |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |
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| T |
37146923 |
cagggaaatacctgcaaaattctagtgaaaatatcagaatattaacttaattttgaaaaactaaaatatatattaatcaattagggtagctaattttaat |
37147022 |
T |
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| Q |
206 |
tttagtga |
213 |
Q |
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|||||||| |
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| T |
37147023 |
tttagtga |
37147030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 37152889 - 37153014
Alignment:
| Q |
7 |
atcatcccacaaagaggtattctagcattcttgttgacatggttaagtacagattcgagcattttaccaccaacattgtcaaggtaaacatcaataccat |
106 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37152889 |
atcattccacaaagaggtattctagcatacttgttgacatggttaagtacagcttcaagcattttaccaccaacattgtcaaggtaaacatcaataccat |
37152988 |
T |
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| Q |
107 |
cagggaaatacctgcaaaattctagt |
132 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
37152989 |
caggaaaatacctgcaaaattctagt |
37153014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 37159085 - 37159254
Alignment:
| Q |
7 |
atcatcccacaaagaggtattctagcattcttgttgacatggttaagtacagattcgagcattttaccaccaacattgtcaaggtaaacatcaataccat |
106 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||| ||||||||| ||||||| |
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| T |
37159085 |
atcattccacaaagaggtattctagcatgcttgttgacatggttaagtacagcttcaagcatttcaccaccaacgttgtcaaagtaaacatcgataccat |
37159184 |
T |
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| Q |
107 |
cagggaaatacctgcaaaattctagt-gaaaatatcagaatattaacttaattttgaaaaactaaaatat |
175 |
Q |
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|||| ||||||||||||||||||||| | ||||| || | ||||||||||||| ||||||||||||| |
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| T |
37159185 |
caggaaaatacctgcaaaattctagtctataatattaggaagttaacttaattttctaaaactaaaatat |
37159254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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