View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13998_low_4 (Length: 607)

Name: NF13998_low_4
Description: NF13998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13998_low_4
NF13998_low_4
[»] chr7 (6 HSPs)
chr7 (16-256)||(21597704-21597944)
chr7 (505-590)||(21601260-21601344)
chr7 (256-305)||(21601057-21601106)
chr7 (362-411)||(21601111-21601159)
chr7 (16-60)||(34448603-34448647)
chr7 (16-60)||(33473514-33473558)
[»] chr1 (5 HSPs)
chr1 (14-53)||(44243895-44243934)
chr1 (12-51)||(23045211-23045250)
chr1 (13-60)||(49843455-49843501)
chr1 (18-55)||(37944128-37944165)
chr1 (16-60)||(45139999-45140043)
[»] scaffold0135 (1 HSPs)
scaffold0135 (13-55)||(32632-32674)
[»] chr4 (7 HSPs)
chr4 (13-55)||(9221979-9222021)
chr4 (12-50)||(50380839-50380877)
chr4 (14-51)||(9615490-9615527)
chr4 (16-60)||(8415488-8415532)
chr4 (12-60)||(10308071-10308119)
chr4 (16-52)||(49385307-49385343)
chr4 (16-60)||(50362132-50362176)
[»] chr2 (6 HSPs)
chr2 (12-60)||(20200725-20200773)
chr2 (13-53)||(346124-346164)
chr2 (14-50)||(9718416-9718452)
chr2 (14-50)||(17842715-17842751)
chr2 (16-60)||(24579661-24579705)
chr2 (12-60)||(33567681-33567729)
[»] chr8 (4 HSPs)
chr8 (14-52)||(29652240-29652278)
chr8 (16-60)||(8881299-8881343)
chr8 (16-60)||(19260572-19260616)
chr8 (12-60)||(41603081-41603129)
[»] chr6 (3 HSPs)
chr6 (12-53)||(13496136-13496177)
chr6 (12-53)||(18253339-18253380)
chr6 (16-60)||(28898880-28898924)
[»] scaffold0017 (1 HSPs)
scaffold0017 (16-60)||(35921-35965)
[»] scaffold0009 (1 HSPs)
scaffold0009 (16-60)||(17749-17792)
[»] chr5 (4 HSPs)
chr5 (12-60)||(12909159-12909207)
chr5 (12-60)||(14474854-14474902)
chr5 (16-60)||(20688064-20688108)
chr5 (16-60)||(27219312-27219356)
[»] chr3 (2 HSPs)
chr3 (16-60)||(45431972-45432016)
chr3 (16-60)||(51882193-51882237)


Alignment Details
Target: chr7 (Bit Score: 138; Significance: 8e-72; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 21597704 - 21597944
Alignment:
Q  16 acaatgcataatatatgtaagttccagagttcaaaccctggccacnnnnnnnnn--tgtgtgccaagttaaatattgaaacatattgacacattaacccg 113  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||||           |||||||||||||||||||||||| |||| |||||||||||||     
T  21597704 acaatgcataatatatgtaagtttcagagtttaaaccctgaccacaaaaaaaaaaatgtgtgccaagttaaatattgaaatatatcgacacattaaccca 21597803  T
Q  114 acttgcttttaaggtagaaagtttgattttgaaataaaaagtgatggaaagtctaattttgaatatttccaaacacatatccaaacaggtcatacattat 213  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21597804 acttgcttttaaggtagaaattttgattttgaaataaaaagtgatggaaagtctaattttgaatatttccaaacacatatccaaacatgtcatacattat 21597903  T
Q  214 cannnnnnnnnnatctaattctcttttgttttatttctcgaaa 256  Q
    ||          |||||||||||||||||||||||||||||||    
T  21597904 ca--ttttgtttatctaattctcttttgttttatttctcgaaa 21597944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 505 - 590
Target Start/End: Original strand, 21601260 - 21601344
Alignment:
Q  505 atgttaaaatcacgatgatcacttgtgattttctgaaagatacactttattgctatctctaaattaaatcacggtggaccaccacc 590  Q
    |||| ||||||||||||| ||   |||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  21601260 atgtcaaaatcacgatgaccaaccgtgattttttgaaagatacactttgttgct-tctgtaaattaaatcacggtggaccaccacc 21601344  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 21601057 - 21601106
Alignment:
Q  256 attcttaatacatcttgttttgagtagttgttgttttatgattcaattta 305  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  21601057 attcttaatacatcttgtttttagtagttgttgttttatgattcatttta 21601106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 362 - 411
Target Start/End: Original strand, 21601111 - 21601159
Alignment:
Q  362 tttattatttcatttcaactagtttactctttgtcgtatatagtttattg 411  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  21601111 tttattatttcatttcaactag-ttactcttggtcgtatatagtttattg 21601159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 34448647 - 34448603
Alignment:
Q  16 acaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    ||||||||||||||||||||| ||||| |||||||||||| ||||    
T  34448647 acaatgcataatatatgtaaggtccagggttcaaaccctgaccac 34448603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 33473558 - 33473514
Alignment:
Q  16 acaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    ||||||||||||||||| ||| ||||| |||| ||||||||||||    
T  33473558 acaatgcataatatatgcaaggtccagggttccaaccctggccac 33473514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 44243895 - 44243934
Alignment:
Q  14 gaacaatgcataatatatgtaagttccagagttcaaaccc 53  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  44243895 gaacaatgcataatatatgtaaggtccagagttcaaaccc 44243934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 23045211 - 23045250
Alignment:
Q  12 atgaacaatgcataatatatgtaagttccagagttcaaac 51  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  23045211 atgaacaatgcataatatatgtaaggtccggagttcaaac 23045250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 49843455 - 49843501
Alignment:
Q  13 tgaacaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    |||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  49843455 tgaacaatgcataatatatgtaagtt-cagagtttaaactctggccac 49843501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 37944165 - 37944128
Alignment:
Q  18 aatgcataatatatgtaagttccagagttcaaaccctg 55  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  37944165 aatgcataatatatgtaagatccagggttcaaaccctg 37944128  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 45140043 - 45139999
Alignment:
Q  16 acaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    ||||||||||||||||| ||| ||||||||| |||||| ||||||    
T  45140043 acaatgcataatatatgcaaggtccagagtttaaaccccggccac 45139999  T

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Target: scaffold0135 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 32632 - 32674
Alignment:
Q  13 tgaacaatgcataatatatgtaagttccagagttcaaaccctg 55  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  32632 tgaacaatgcataatatatgtaagatccagagctcaaaccctg 32674  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 9221979 - 9222021
Alignment:
Q  13 tgaacaatgcataatatatgtaagttccagagttcaaaccctg 55  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  9221979 tgaacaatgcataatatatgtaagatccagagctcaaaccctg 9222021  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 50380877 - 50380839
Alignment:
Q  12 atgaacaatgcataatatatgtaagttccagagttcaaa 50  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  50380877 atgaacaatgcataatatatgtaaggtccggagttcaaa 50380839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 9615527 - 9615490
Alignment:
Q  14 gaacaatgcataatatatgtaagttccagagttcaaac 51  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  9615527 gaacaatgcataatatatgtaagatccggagttcaaac 9615490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 8415532 - 8415488
Alignment:
Q  16 acaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    ||||||||||||||||||||| ||||  |||||||||||| ||||    
T  8415532 acaatgcataatatatgtaagatccaaggttcaaaccctgaccac 8415488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 10308071 - 10308119
Alignment:
Q  12 atgaacaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    ||||| ||||||||| ||||||||||||| ||||| |||||||| ||||    
T  10308071 atgaataatgcataaaatatgtaagttccggagtttaaaccctgaccac 10308119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 49385343 - 49385307
Alignment:
Q  16 acaatgcataatatatgtaagttccagagttcaaacc 52  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  49385343 acaatgcataatatatgtaagatccggagttcaaacc 49385307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 50362176 - 50362132
Alignment:
Q  16 acaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    ||||||||||||||||| ||| ||||| ||||||||| |||||||    
T  50362176 acaatgcataatatatgcaaggtccagggttcaaaccttggccac 50362132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 20200725 - 20200773
Alignment:
Q  12 atgaacaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    ||||||||||||||||||||| ||| ||||| |||||||||| ||||||    
T  20200725 atgaacaatgcataatatatgcaaggtccagggttcaaaccccggccac 20200773  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 346164 - 346124
Alignment:
Q  13 tgaacaatgcataatatatgtaagttccagagttcaaaccc 53  Q
    |||| ||||||||||||||||||| ||||| ||||||||||    
T  346164 tgaataatgcataatatatgtaaggtccagggttcaaaccc 346124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 9718416 - 9718452
Alignment:
Q  14 gaacaatgcataatatatgtaagttccagagttcaaa 50  Q
    |||||||||||||||| || |||||||||||||||||    
T  9718416 gaacaatgcataatatttgcaagttccagagttcaaa 9718452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 17842751 - 17842715
Alignment:
Q  14 gaacaatgcataatatatgtaagttccagagttcaaa 50  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  17842751 gaacaatgcataatatatgtaagatccggagttcaaa 17842715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 24579705 - 24579661
Alignment:
Q  16 acaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    ||||||||||||||||| ||| ||||| |||||||| ||||||||    
T  24579705 acaatgcataatatatgcaaggtccagggttcaaactctggccac 24579661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 33567681 - 33567729
Alignment:
Q  12 atgaacaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    ||||||||||||| | ||||| ||||||||| |||||||||| ||||||    
T  33567681 atgaacaatgcatgaaatatgcaagttccagggttcaaaccccggccac 33567729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 29652240 - 29652278
Alignment:
Q  14 gaacaatgcataatatatgtaagttccagagttcaaacc 52  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  29652240 gaacaatgcataatatatgcaaggtccagagttcaaacc 29652278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 8881299 - 8881343
Alignment:
Q  16 acaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    ||||||||||||||||| ||| ||||| |||||||||| ||||||    
T  8881299 acaatgcataatatatgcaaggtccagggttcaaaccccggccac 8881343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 19260616 - 19260572
Alignment:
Q  16 acaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    ||||||||||||||||||||| ||| | |||||||||| ||||||    
T  19260616 acaatgcataatatatgtaaggtccggggttcaaaccccggccac 19260572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 41603081 - 41603129
Alignment:
Q  12 atgaacaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    ||||||||||||||||||||||||| ||  | ||||||||||| |||||    
T  41603081 atgaacaatgcataatatatgtaaggtctggggttcaaacccttgccac 41603129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 13496136 - 13496177
Alignment:
Q  12 atgaacaatgcataatatatgtaagttccagagttcaaaccc 53  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||    
T  13496136 atgaacaatgcataatatatgcaaggtccggagttcaaaccc 13496177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 18253380 - 18253339
Alignment:
Q  12 atgaacaatgcataatatatgtaagttccagagttcaaaccc 53  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||    
T  18253380 atgaacaatgcataatatatgcaaggtccagggttcaaaccc 18253339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 28898880 - 28898924
Alignment:
Q  16 acaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    ||||||||||||||||| ||| ||| |||||||||||| ||||||    
T  28898880 acaatgcataatatatgaaaggtccggagttcaaaccccggccac 28898924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 35965 - 35921
Alignment:
Q  16 acaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    |||||||| ||||||||||||||| || |||||||||| ||||||    
T  35965 acaatgcacaatatatgtaagttctagggttcaaacccgggccac 35921  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 17749 - 17792
Alignment:
Q  16 acaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    |||||||||||||||| |||| ||||| |||||||||||||||||    
T  17749 acaatgcataatatatataaggtccag-gttcaaaccctggccac 17792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 12909207 - 12909159
Alignment:
Q  12 atgaacaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    ||||||||||||||||||||||||| | ||| ||| ||||| |||||||    
T  12909207 atgaacaatgcataatatatgtaaggttcagggtttaaaccttggccac 12909159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 14474854 - 14474902
Alignment:
Q  12 atgaacaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    |||||||| |||||||||||| ||| ||||| |||||||||| ||||||    
T  14474854 atgaacaacgcataatatatgcaaggtccagggttcaaaccccggccac 14474902  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 20688064 - 20688108
Alignment:
Q  16 acaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    ||||||||||||||||| ||| ||| |||||||||| ||||||||    
T  20688064 acaatgcataatatatgcaaggtccggagttcaaactctggccac 20688108  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 27219312 - 27219356
Alignment:
Q  16 acaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    ||||| ||||||||||||||| ||||| |||||||||| ||||||    
T  27219312 acaatacataatatatgtaagatccagggttcaaaccccggccac 27219356  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 45431972 - 45432016
Alignment:
Q  16 acaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    ||||||||||||||||| ||| ||| | |||||||||||||||||    
T  45431972 acaatgcataatatatgcaaggtccggggttcaaaccctggccac 45432016  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 51882237 - 51882193
Alignment:
Q  16 acaatgcataatatatgtaagttccagagttcaaaccctggccac 60  Q
    ||||||||||||||||| ||| ||||| |||||||||| ||||||    
T  51882237 acaatgcataatatatgcaagatccagggttcaaaccccggccac 51882193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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