View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13998_low_5 (Length: 513)
Name: NF13998_low_5
Description: NF13998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13998_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 9 - 498
Target Start/End: Original strand, 22794898 - 22795394
Alignment:
| Q |
9 |
gagaagaaaatccgagagtactttgccttcatttcgacgcaaatcacattctggaggaggag---atactcattttaattcaatgcatcccatcactgag |
105 |
Q |
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| T |
22794898 |
gagaagaaaatccgagagtactttgccttcatttcgacgcaaatcacattctggaggaggaggagatactcattttaattcaatgcatcccatcactgag |
22794997 |
T |
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| Q |
106 |
acccctgaaaataaaatcaactcgcgtcgccgttctttcatggggtatgtatgcatttttacttccaactactcgtctttttagtttgaaaaaatat--g |
203 |
Q |
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| T |
22794998 |
acccctgaaaataaaatcaactcgcgtcgccgttctttcatggggtatgtatgcatttttacttacaactactcatctttttagtttgaaaaaatatatg |
22795097 |
T |
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| Q |
204 |
tgttttctttttgctcgtattcaatgtcatgagcaatttgtatacatg--cttctgcaggttcataaggaaaagtttgtcaaacaatgaaagcttcaatg |
301 |
Q |
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| T |
22795098 |
tgttttctttttgctcgtattcaatgtcatgagcattttgtatgtgttttcttctgcaggttcataaggaaaagtttgtcaaacaatgaaagcttcaatg |
22795197 |
T |
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| Q |
302 |
atgaacagcttgctgatgatgaggatagctctgaggatgatgaaaggcctgatagtgttgacgagaaaattaaaaagagggaaaagagaaagggtcttga |
401 |
Q |
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| T |
22795198 |
atgaacagcttgctgatgatgaggatagctctgaggatgatgaaaggcctgatagtgttgacgagaaaattaaaaagagggaaaagagaaagggtcttga |
22795297 |
T |
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| Q |
402 |
tcttgctactacacttgaacgtatcgagaagaactttgtcattactgatcctaggctcccagataaccccattgtaagaaaatttataatcatcttt |
498 |
Q |
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| T |
22795298 |
tcttgctactacacttgaacgtatcgagaagaactttgtcattactgatcctaggctcccagataaccccattgtaagaaaatttataatcatcttt |
22795394 |
T |
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Back To:
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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 378 - 458
Target Start/End: Original strand, 40960271 - 40960351
Alignment:
| Q |
378 |
gagggaaaagagaaagggtcttgatcttgctactacacttgaacgtatcgagaagaactttgtcattactgatcctaggct |
458 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |
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| T |
40960271 |
gagggaaaagcgaaaaggtcttgatcttgctactacacttgagcgtattgagaaaaactttgtcattactgatccaaggct |
40960351 |
T |
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