View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13998_low_6 (Length: 491)

Name: NF13998_low_6
Description: NF13998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13998_low_6
NF13998_low_6
[»] chr7 (8 HSPs)
chr7 (1-459)||(31054826-31055288)
chr7 (1-223)||(31150072-31150295)
chr7 (1-223)||(31168364-31168587)
chr7 (1-223)||(31066366-31066595)
chr7 (1-82)||(31113616-31113697)
chr7 (153-224)||(31113863-31113935)
chr7 (38-75)||(31194721-31194758)
chr7 (415-459)||(42253832-42253876)
[»] chr4 (2 HSPs)
chr4 (409-459)||(52430719-52430769)
chr4 (412-457)||(48620501-48620546)
[»] chr8 (8 HSPs)
chr8 (412-457)||(1839635-1839680)
chr8 (410-457)||(29584395-29584442)
chr8 (412-445)||(1111305-1111338)
chr8 (414-459)||(23932722-23932767)
chr8 (413-446)||(26772819-26772852)
chr8 (415-459)||(1839984-1840028)
chr8 (410-446)||(13406296-13406332)
chr8 (419-459)||(41455134-41455174)
[»] chr3 (2 HSPs)
chr3 (411-459)||(517794-517842)
chr3 (411-457)||(33944454-33944500)
[»] chr6 (2 HSPs)
chr6 (415-454)||(25073420-25073459)
chr6 (412-452)||(25361369-25361409)
[»] chr5 (5 HSPs)
chr5 (412-459)||(39649439-39649486)
chr5 (414-459)||(13569260-13569305)
chr5 (409-457)||(4842027-4842075)
chr5 (412-452)||(6620465-6620505)
chr5 (33-69)||(37020338-37020374)
[»] chr2 (2 HSPs)
chr2 (415-458)||(36870135-36870178)
chr2 (413-457)||(1365044-1365088)
[»] chr1 (2 HSPs)
chr1 (415-452)||(36887095-36887132)
chr1 (408-452)||(7186846-7186890)
[»] scaffold0053 (1 HSPs)
scaffold0053 (412-444)||(29124-29156)


Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 31054826 - 31055288
Alignment:
Q  1 tgtagcagtttcaaggtcaatagaggaagcggttggaccatgtgaatgtgctcccaagtatacaatataacactgtaaataattaatattaaaaaaccaa 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31054826 tgtagcagtttcaaggtcaatagaggaaggggttggaccatgtgaatgtgctcccaagtatacaatgtaacactgtaaataattaatattaaaaaaccaa 31054925  T
Q  101 tagcttaagaaatttaatgaaatcatgatcttaattacaaattatatatacaattaagaagcaaaactagcttacctttttgctggcatgaacatgattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31054926 tagcttaagaaatttaatgaaatcatgatcttaattacaaattatatatacaattaagaagcaaaactagcttacctttttgctggcatgaacatgattc 31055025  T
Q  201 agcaacaaagtgaaaataagaagacataatatggagcaatccattcttctctgtttttggaaagtcatgtttagcttagcttagagctttatgcttcgtt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  31055026 agcaacaaagtgaaaataagaagacataatatggagcaatccattcttctctgtttttggaaagtcatgtttagcttagcttagagctttatgcttagtt 31055125  T
Q  301 cccctctgaaatat---ataataacatacgggataataaaagaaagctcaaggctaatttattctttgcattttggaaagctaaatg-aagtattatgac 396  Q
    ||||||||||||||   |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |    
T  31055126 cccctctgaaatatataataataacatacgggacaataaaagaaagctcaatgctaatttattctttgcattttggaaagctaaatgaaagtattatgtc 31055225  T
Q  397 catgagagttgtcaacttaggctttgtttgctagtttggagggaaagggaaggaaatgcttgg 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31055226 catgagagttgtcaacttaggctttgtttgctagtttggagggaaagggaaggaaatgtttgg 31055288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31150072 - 31150295
Alignment:
Q  1 tgtagcagtttcaaggtcaatagaggaagcggttggaccatgtgaatgtgctcccaagtatacaatataacactgtaaataattaatattaaa----aaa 96  Q
    |||||||||||||||||||| ||||||||  ||||||||||||  ||||||||||||||||||||| || ||||||||| ||| ||||  |||    |||    
T  31150072 tgtagcagtttcaaggtcaacagaggaaggagttggaccatgtacatgtgctcccaagtatacaatgtagcactgtaaa-aataaataggaaaccaaaaa 31150170  T
Q  97 ccaatagcttaagaaatttaatgaaatcatgatcttaattacaaattatatatacaattaagaagcaaaactagcttacctttttgctggcatgaacatg 196  Q
    |||| |||||| |||||| ||||||||||| |||||||||| ||| ||||||| ||||||||||||||| |||||||||||||||||| || ||||||||    
T  31150171 ccaaaagcttatgaaatt-aatgaaatcataatcttaattataaagtatatatgcaattaagaagcaaa-ctagcttacctttttgcttgcgtgaacatg 31150268  T
Q  197 attcagcaacaaagtgaaaataagaag 223  Q
    |||||||| |||  |||||||||||||    
T  31150269 attcagcatcaagatgaaaataagaag 31150295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31168364 - 31168587
Alignment:
Q  1 tgtagcagtttcaaggtcaatagaggaagcggttggaccatgtgaatgtgctcccaagtatacaatataacactgtaaataattaatattaaa----aaa 96  Q
    |||||||||||||||||||| ||||||||  ||||||||||||  ||||||||||||||||||||| || ||||||||| ||| ||||  |||    |||    
T  31168364 tgtagcagtttcaaggtcaacagaggaaggagttggaccatgtacatgtgctcccaagtatacaatgtagcactgtaaa-aataaataggaaaccaaaaa 31168462  T
Q  97 ccaatagcttaagaaatttaatgaaatcatgatcttaattacaaattatatatacaattaagaagcaaaactagcttacctttttgctggcatgaacatg 196  Q
    |||| |||||| |||||| ||||||||||| |||||||||| ||| ||||||| ||||||||||||||| |||||||||||||||||| || ||||||||    
T  31168463 ccaaaagcttatgaaatt-aatgaaatcataatcttaattataaagtatatatgcaattaagaagcaaa-ctagcttacctttttgcttgcgtgaacatg 31168560  T
Q  197 attcagcaacaaagtgaaaataagaag 223  Q
    |||||||| |||  |||||||||||||    
T  31168561 attcagcatcaagatgaaaataagaag 31168587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31066366 - 31066595
Alignment:
Q  1 tgtagcagtttcaaggtcaatagaggaagcggttggaccatgtgaatgtgctcccaagtatacaatataacactgtaaat--------aattaatattaa 92  Q
    |||||||||||||||||||| ||||| ||  |||||||||||||| || ||||||| ||| ||||| || ||||| |||         || ||||| |||    
T  31066366 tgtagcagtttcaaggtcaacagaggtaggagttggaccatgtgagtgcgctcccatgtaaacaatgtagcactgaaaaagaaaaaaaaaataatagtaa 31066465  T
Q  93 aaaaccaatagcttaagaaatttaatgaaatcatgatcttaattacaaattatatatacaattaagaagcaaaactagcttacctttttgctggcatgaa 192  Q
    ||||||||||||||| |||||| |||||||  || |||||||||||||  || ||||  |||||||||||||||||||||||| ||||||||||||||||    
T  31066466 aaaaccaatagcttatgaaatt-aatgaaaggatcatcttaattacaatgtacatatgtaattaagaagcaaaactagcttacatttttgctggcatgaa 31066564  T
Q  193 catgattcagcaacaaagtgaaaataagaag 223  Q
    |||||||||||| |||  |||||||||||||    
T  31066565 catgattcagcatcaagatgaaaataagaag 31066595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31113616 - 31113697
Alignment:
Q  1 tgtagcagtttcaaggtcaatagaggaagcggttggaccatgtgaatgtgctcccaagtatacaatataacactgtaaataa 82  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||| |||||||| |||| |||||||    
T  31113616 tgtagcagtttcaaggtcaacagaggaaggagttggaccatgtgaatgtgctcccaagtacacaatatagcactataaataa 31113697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 31113863 - 31113935
Alignment:
Q  153 attaagaagcaaaactagctt-acctttttgctggcatgaacatgattcagcaacaaagtgaaaataagaaga 224  Q
    |||||||||||||||| |||| |||| |||||| ||||||||||  |||||||||||||||||||||||||||    
T  31113863 attaagaagcaaaactggctttacctctttgctagcatgaacatccttcagcaacaaagtgaaaataagaaga 31113935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 31194758 - 31194721
Alignment:
Q  38 ccatgtgaatgtgctcccaagtatacaatataacactg 75  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  31194758 ccatgagaatgtgctcccaagtatacaatgtaacactg 31194721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 459
Target Start/End: Original strand, 42253832 - 42253876
Alignment:
Q  415 aggctttgtttgctagtttggagggaaagggaaggaaatgcttgg 459  Q
    ||||||||||||| | ||||||||| |||||||||||| ||||||    
T  42253832 aggctttgtttgcgaatttggaggggaagggaaggaaaggcttgg 42253876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 459
Target Start/End: Complemental strand, 52430769 - 52430719
Alignment:
Q  409 caacttaggctttgtttgctagtttggagggaaagggaaggaaatgcttgg 459  Q
    ||||||||||||||||||| ||||||||||| ||||||| |||||| ||||    
T  52430769 caacttaggctttgtttgcgagtttggaggggaagggaatgaaatgtttgg 52430719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Complemental strand, 48620546 - 48620501
Alignment:
Q  412 cttaggctttgtttgctagtttggagggaaagggaaggaaatgctt 457  Q
    |||||||||||||||| ||||||||||| | |||||||||| ||||    
T  48620546 cttaggctttgtttgcgagtttggaggggaggggaaggaaaggctt 48620501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 1839635 - 1839680
Alignment:
Q  412 cttaggctttgtttgctagtttggagggaaagggaaggaaatgctt 457  Q
    |||||||||||||||| ||||||||||| |||||||||||| ||||    
T  1839635 cttaggctttgtttgcgagtttggaggggaagggaaggaaaggctt 1839680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 457
Target Start/End: Complemental strand, 29584442 - 29584395
Alignment:
Q  410 aacttaggctttgtttgctagtttggagggaaagggaaggaaatgctt 457  Q
    |||| ||||||||||||| ||||||||||||| |||||||||| ||||    
T  29584442 aactaaggctttgtttgcgagtttggagggaaggggaaggaaaggctt 29584395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Complemental strand, 1111338 - 1111305
Alignment:
Q  412 cttaggctttgtttgctagtttggagggaaaggg 445  Q
    |||||||||||||||| |||||||||||||||||    
T  1111338 cttaggctttgtttgcgagtttggagggaaaggg 1111305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 23932767 - 23932722
Alignment:
Q  414 taggctttgtttgctagtttggagggaaagggaaggaaatgcttgg 459  Q
    |||||||||||||| ||||||||||| ||||||||| || ||||||    
T  23932767 taggctttgtttgcgagtttggaggggaagggaagggaaggcttgg 23932722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 446
Target Start/End: Complemental strand, 26772852 - 26772819
Alignment:
Q  413 ttaggctttgtttgctagtttggagggaaaggga 446  Q
    ||||||||||||||| ||||||||||||||||||    
T  26772852 ttaggctttgtttgcgagtttggagggaaaggga 26772819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 459
Target Start/End: Complemental strand, 1840028 - 1839984
Alignment:
Q  415 aggctttgtttgctagtttggagggaaagggaaggaaatgcttgg 459  Q
    ||||||||||||| ||||||||||| |||| ||||||| ||||||    
T  1840028 aggctttgtttgcgagtttggaggggaaggaaaggaaaggcttgg 1839984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 446
Target Start/End: Original strand, 13406296 - 13406332
Alignment:
Q  410 aacttaggctttgtttgctagtttggagggaaaggga 446  Q
    ||||||||||||||||||  |||||||||||||||||    
T  13406296 aacttaggctttgtttgcgtgtttggagggaaaggga 13406332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 41455134 - 41455174
Alignment:
Q  419 tttgtttgctagtttggagggaaagggaaggaaatgcttgg 459  Q
    ||||||||| ||||| ||||| |||||||||||||||||||    
T  41455134 tttgtttgcgagtttagagggtaagggaaggaaatgcttgg 41455174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 459
Target Start/End: Complemental strand, 517842 - 517794
Alignment:
Q  411 acttaggctttgtttgctagtttggagggaaagggaaggaaatgcttgg 459  Q
    ||||||||||||||||| ||||||||||| |||||| ||||| ||||||    
T  517842 acttaggctttgtttgcgagtttggaggggaagggagggaaaggcttgg 517794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 457
Target Start/End: Original strand, 33944454 - 33944500
Alignment:
Q  411 acttaggctttgtttgctagtttggagggaaagggaaggaaatgctt 457  Q
    ||||||||||||||||  |||||||||||||||| ||||||| ||||    
T  33944454 acttaggctttgtttgggagtttggagggaaaggaaaggaaaggctt 33944500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 454
Target Start/End: Complemental strand, 25073459 - 25073420
Alignment:
Q  415 aggctttgtttgctagtttggagggaaagggaaggaaatg 454  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  25073459 aggctttgtttgcaagtttggaggggaagggaaggaaatg 25073420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 452
Target Start/End: Complemental strand, 25361409 - 25361369
Alignment:
Q  412 cttaggctttgtttgctagtttggagggaaagggaaggaaa 452  Q
    |||||||||||||||| ||||| |||||||||| |||||||    
T  25361409 cttaggctttgtttgcgagttttgagggaaaggaaaggaaa 25361369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 459
Target Start/End: Original strand, 39649439 - 39649486
Alignment:
Q  412 cttaggctttgtttgctagtttggagggaaagggaaggaaatgcttgg 459  Q
    |||||||||||||||| ||||||||||| |||||| ||||| ||||||    
T  39649439 cttaggctttgtttgcgagtttggagggcaagggagggaaaggcttgg 39649486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 13569260 - 13569305
Alignment:
Q  414 taggctttgtttgctagtttggagggaaagggaaggaaatgcttgg 459  Q
    |||||||||||||| ||||||||||| |||||| || |||||||||    
T  13569260 taggctttgtttgcgagtttggaggggaagggaggggaatgcttgg 13569305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 457
Target Start/End: Complemental strand, 4842075 - 4842027
Alignment:
Q  409 caacttaggctttgtttgctagtttggagggaaagggaaggaaatgctt 457  Q
    ||||||||||||||||||| |||||| | ||||| | ||||||||||||    
T  4842075 caacttaggctttgtttgcgagtttgaaaggaaatgaaaggaaatgctt 4842027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 452
Target Start/End: Complemental strand, 6620505 - 6620465
Alignment:
Q  412 cttaggctttgtttgctagtttggagggaaagggaaggaaa 452  Q
    |||||||||||||||| ||||| ||||| ||||||||||||    
T  6620505 cttaggctttgtttgcgagttttgaggggaagggaaggaaa 6620465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 37020338 - 37020374
Alignment:
Q  33 ttggaccatgtgaatgtgctcccaagtatacaatata 69  Q
    |||||||||| |||||| |||||||||||||||||||    
T  37020338 ttggaccatgagaatgtcctcccaagtatacaatata 37020374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 458
Target Start/End: Original strand, 36870135 - 36870178
Alignment:
Q  415 aggctttgtttgctagtttggagggaaagggaaggaaatgcttg 458  Q
    ||||||||||||| |||||| |||| ||||||||||||||||||    
T  36870135 aggctttgtttgcgagtttgaaggggaagggaaggaaatgcttg 36870178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 457
Target Start/End: Complemental strand, 1365088 - 1365044
Alignment:
Q  413 ttaggctttgtttgctagtttggagggaaagggaaggaaatgctt 457  Q
    ||||||||||||||| ||||||||||| |||| ||||||| ||||    
T  1365088 ttaggctttgtttgcgagtttggaggggaaggaaaggaaaggctt 1365044  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 452
Target Start/End: Complemental strand, 36887132 - 36887095
Alignment:
Q  415 aggctttgtttgctagtttggagggaaagggaaggaaa 452  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  36887132 aggctttgtttgcgagtttggagggaaggggaaggaaa 36887095  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 452
Target Start/End: Complemental strand, 7186890 - 7186846
Alignment:
Q  408 tcaacttaggctttgtttgctagtttggagggaaagggaaggaaa 452  Q
    |||||| ||||||||||||| ||||| ||||||| ||||||||||    
T  7186890 tcaactaaggctttgtttgcgagttttgagggaaggggaaggaaa 7186846  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 29124 - 29156
Alignment:
Q  412 cttaggctttgtttgctagtttggagggaaagg 444  Q
    |||||||||||||||| ||||||||||||||||    
T  29124 cttaggctttgtttgcgagtttggagggaaagg 29156  T

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