View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13998_low_8 (Length: 458)
Name: NF13998_low_8
Description: NF13998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13998_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 53308885 - 53308484
Alignment:
| Q |
18 |
ctttgggggtcaaaactgttcatcatgagtatagttgtgcaaatttaccaaagaagaggaaatatatgtgcatgtgcagttgtgcactcaagagtcctag |
117 |
Q |
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| T |
53308885 |
ctttgggggtcaaaactgttcatcatgagtatagttgtgcaaatttaccaaagaagaggaaatatatgtgcatgtgcagttgtgcactcaagagtcctag |
53308786 |
T |
|
| Q |
118 |
tgcaaatggtaattggatgtaactagttaattttgaaactaattgtaggtagaaatggatcaaaacagaaaagggtttgtttgtggtgttcctggggcac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53308785 |
tgcaaatggtaattggatgtaactagttaattttgaatctaattgtaggtagaaatggatcaaaacagaaaagggtttgtttgtggtgttcctggggcac |
53308686 |
T |
|
| Q |
218 |
tatatttgatgatacatatatatatttgattgatgttgagaaatgaaaatgtacatgtagtaagcacaaatgtcgggagtggtcagatagatgtctagaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53308685 |
tatatttgatgatacatatatatatttgattgatgttgagaaatgaaaatgtacatgtagtaagcacaaatgtcgggagtggtcagatagatgtctagaa |
53308586 |
T |
|
| Q |
318 |
tccaccccactctcgtggcttagttttactttttcaagatcatatttaatagtatacacaaatcctataactattactactaatttttcccttataaaat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
53308585 |
tccaccccactctcgtggcttagttttactttttcaagatcatatttaatagtatactcaaatcctataactattactactaatttttcccttataaaat |
53308486 |
T |
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| Q |
418 |
at |
419 |
Q |
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|| |
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| T |
53308485 |
at |
53308484 |
T |
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