View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_high_1 (Length: 736)
Name: NF13999_high_1
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 660; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 15 - 722
Target Start/End: Original strand, 10201314 - 10202022
Alignment:
| Q |
15 |
tagcatagggggaagagaaaatgtttacaaacaaccatacaacaattgaaccacaagaaatggaagatgaacttaaaattttggcttgtgtgtatgatcc |
114 |
Q |
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| T |
10201314 |
tagcaaagggggaagagaaaatgttttcaaacaaccatacaacaattgaaccacaagaaatggaagatgaacttaaaattttggcttgtgtgtatgatcc |
10201413 |
T |
|
| Q |
115 |
tcgacaagtatctgcgatactagccacaatactagcaatacatggctctaaaacatcaccttctaccacttatttaatgcacttaatagagcttgtgaag |
214 |
Q |
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| T |
10201414 |
tcgacaagtatctgcgatactagccacaatactagcaatacatggctctaaaacatcaccttccaccacttatttaatgcacttaatagagcttgtgaag |
10201513 |
T |
|
| Q |
215 |
aaaatcaagtcaaacttgttataccatgaaaaagaaaatggcgatatcagcgatgatgacgaagcctttggtggaaatgatgtggtggacattaataatg |
314 |
Q |
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| T |
10201514 |
aaaatcaagtcaaacttgttataccatgaaaaagaaaatggcgatatcagcgatgatgacgaagcctttggtggaaatgatgtggtggacattaataatg |
10201613 |
T |
|
| Q |
315 |
ccctagataccttcactgaagacacaaagattttggtccaacaaaaaaggacagtttcttcttttctaagtctgtatgaagaagtgtgcagcgaagcaga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10201614 |
ccctagataccttcactgaagacacaaagattttggtccaacaaaaaaggacagtttcttcttttctaagtctgtatgaagaagtgtgcagcgaagcaga |
10201713 |
T |
|
| Q |
415 |
aaatcttcaagtatcgattattcttcttccctttcacaagcatcaacgaatcgatggaaaacttgaaagcggaaaagaaggtataaggattactaatcag |
514 |
Q |
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| T |
10201714 |
aaatcttcaagtatcgattattcttcttccctttcacaagcatcaacgaatcgatggaaaacttgaaagcggaaaagaaggtataaggattactaatcag |
10201813 |
T |
|
| Q |
515 |
aaggttcttaggcatgcaccttgttctgtcggtgtaattatagaaagaggacttactacgtcatttggtttctcggaactaatagaatctgaaaccattc |
614 |
Q |
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| T |
10201814 |
aaggttcttaggcatgcaccttgttctgtcggtgtaattatagaaagaggacttactacatcatttggtttctcggaactaatagaatctgaaaccattc |
10201913 |
T |
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| Q |
615 |
aaaatgttgcaacac-nnnnnnnggagggccggatgaccgcgaggctgttgcttggagcctacgcatttcaaaatgtcctcgaattaacttgacaatcat |
713 |
Q |
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| T |
10201914 |
aaaatgttgcaacacttttttttggagggccggatgaccgcgaggctgttgcttggagcctacgcatttcaaaatgccctcgaattaacttgacaatcat |
10202013 |
T |
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| Q |
714 |
tagattttt |
722 |
Q |
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||||||||| |
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| T |
10202014 |
tagattttt |
10202022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 564
Target Start/End: Original strand, 51740527 - 51741065
Alignment:
| Q |
23 |
ggggaagagaaaatgtttacaaacaaccatacaacaattgaaccacaagaaatggaagatgaacttaaaattttggcttgtgtgtatgatcctcgacaag |
122 |
Q |
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||||||||||||||||| |||| ||||||||| | |||||||||||||| |||||||| || ||| ||||||||||||||| ||||||||||| |||| |
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| T |
51740527 |
ggggaagagaaaatgttctcaaataaccatacagctattgaaccacaagagatggaagacgagcttcgaattttggcttgtgtatatgatcctcgtcaag |
51740626 |
T |
|
| Q |
123 |
tatctgcgatactagccacaatactagcaatacatggctctaaaacatcaccttctaccacttatttaatgcacttaatagagcttgtgaagaaaatcaa |
222 |
Q |
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| T |
51740627 |
tatcatcaatacttgcaacaatactagcaatgcatggatctaaaacatcaccttcaaccacttatttaatgcacctaattgagcttgtgaagaagatcaa |
51740726 |
T |
|
| Q |
223 |
gtcaaacttgttataccatgaaaaagaaaatggcgatatcagcgatgatgacgaagcctttggtggaaatgatgtggtggacattaataatgccctagat |
322 |
Q |
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| T |
51740727 |
atccaatttattgtttcatgaaaaggaaaatgctgaccttagtgacgatgatgat---tatggtggcaatgacgtcgttgaaattaataattcattagat |
51740823 |
T |
|
| Q |
323 |
accttcactgaagacacaaagattttggtccaacaaaaaaggacagtttcttcttttctaagtctgtatgaagaagtgtgcagcgaagcagaaaatcttc |
422 |
Q |
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| ||||||| |||||||||||||||||| || |||| |||| |||| || ||||||| ||| |||||||||| || |||| ||||| ||| |||||| |
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| T |
51740824 |
gcattcactgcagacacaaagattttggttcaccaaagaagggcagtatcatcttttccaagcttgtatgaagatgtttgcaatgaagctgaagatcttc |
51740923 |
T |
|
| Q |
423 |
aagtatcgattattcttcttccctttcacaagcatcaacgaatcgatggaaaacttgaaagcggaaaagaaggtataaggattactaatcagaaggttct |
522 |
Q |
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||||||| ||||| |||||||| |||||||||||||||||||| ||||| ||| | ||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
51740924 |
aagtatcaattatccttcttccttttcacaagcatcaacgaattgatggtaaattagaaagtggaaaagaaggtataaggattactaatcaaaaggttct |
51741023 |
T |
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| Q |
523 |
taggcatgcaccttgttctgtcggtgtaattatagaaagagg |
564 |
Q |
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||| || ||||||||||| || ||||| ||||| |||||||| |
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| T |
51741024 |
tagacacgcaccttgttcagtaggtgttattatcgaaagagg |
51741065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 637 - 723
Target Start/End: Original strand, 51741139 - 51741225
Alignment:
| Q |
637 |
ggagggccggatgaccgcgaggctgttgcttggagcctacgcatttcaaaatgtcctcgaattaacttgacaatcattagatttttt |
723 |
Q |
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| T |
51741139 |
ggaggcccggacgatcgtgaggctatagcttggagcctaagaatttcaaaatgccctcgcattaatctgacaatcatcagatttttt |
51741225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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