View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_high_12 (Length: 476)
Name: NF13999_high_12
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 60 - 459
Target Start/End: Complemental strand, 52887668 - 52887271
Alignment:
| Q |
60 |
cacagtaacatacacttgcagagtggaggtctcaccttaccttagtaagatacagatgagaacggaggaagagacagtgctcagtttctttcttgttcct |
159 |
Q |
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| T |
52887668 |
cacagtaacatacacttgcagagtggaggtctcaccttaccttagtaagatacagatgagaacggaggaagagacagtgctcagtttctttcttgttcct |
52887569 |
T |
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| Q |
160 |
attgtgggaccactaccattcacctcctcagtatcttttttactatctcttcaattattctaccttgtttatttactataatgtccttcctttctgcttt |
259 |
Q |
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| T |
52887568 |
attgtgggaccactaccattcacctcctcagtatcttttttactatctcttcaattattctaccttgtttatttactataatgtccttcctttctgcttt |
52887469 |
T |
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| Q |
260 |
tttctttcttaatactttagttttagctcactcattttatgtttcataaatcaatgaataatacggttacatgtgtaagttttaaatcgtagtacttccg |
359 |
Q |
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| T |
52887468 |
tttctttcttaatacttta-ctttagctcactcattttatg-ttcataaatgaatgaataatacgattacatgtgtaagttttaaatggtagtacttccg |
52887371 |
T |
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| Q |
360 |
attttctttaaaaatacattagtttaggtcttctagaagaattaatatttaggggaattcaaattgaacaaatattaaaaataattgaccagtcatatat |
459 |
Q |
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| T |
52887370 |
attttctttaaaaatacattagtttaggacttctagaagaattaatatttaggggaattcaaattgaacaaatattaaaaataattgaccagtcatatat |
52887271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 52887713 - 52887680
Alignment:
| Q |
9 |
gagagagaagaagaataagcacaccaccgactct |
42 |
Q |
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| T |
52887713 |
gagagtgaagaagaataagcacaccaccgactct |
52887680 |
T |
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