View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13999_high_14 (Length: 455)
Name: NF13999_high_14
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_high_14 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 455
Target Start/End: Complemental strand, 40047094 - 40046659
Alignment:
| Q |
19 |
agaaatgcctataaaatcattgaccgtctgatttaactcggcatatttaaaaatcataaattaaaaatcgtctgattaagattggatgatcgatgatac- |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40047094 |
agaaaagcctataaaatcattgaccgtctgatttaactcggcatatttaaaaatcataaattaaaaatcgtctgattaagattggatgatcgatgatgcc |
40046995 |
T |
|
| Q |
118 |
--actgcaagaacttgatgattgcg-taaatgcaggtccttctagaggtccaattggaaattgcttaaaataggttgagttgagtttacattcatgagct |
214 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40046994 |
tgactgcaagaacttgatgattgcggtaaatgcaggtccttctagagatccaattggaaattgcttaaaataggttgagttgagtttacattcatgagct |
40046895 |
T |
|
| Q |
215 |
tccgcatgggttttactattgaaacaatgttgatgaaacataaacaaaagaagttagaaaatcattgtctcaaaattcaatttatatacattctctcttg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40046894 |
tccgcatgggttttactattgaaacaatgttgatgaaacataaacaaaagaagttagaaaatcattgtctcaaaattcaatttatatacattctctcttg |
40046795 |
T |
|
| Q |
315 |
tttttgttgagtggacgttgattacatcattgtctcagccaactgcggaaatggaaaagtggagattgggaatattatatagctcatttgtctcgaactt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
40046794 |
tttttgttgagtggacgttgattacatccttgtctcagccaactgcggaaatggaaaagtggagattggga-----atatagctcacttgtctcgaactt |
40046700 |
T |
|
| Q |
415 |
aattttgccataaattaattttataatttcatgacattaac |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40046699 |
aattttgccataaattaattttataatttcatgacattaac |
40046659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University