View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_high_15 (Length: 434)
Name: NF13999_high_15
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 10 - 419
Target Start/End: Complemental strand, 8458140 - 8457731
Alignment:
| Q |
10 |
agatgaaatatgatccttttagtgccaaaagttgagcacacattgtttagcacttttggaccctacttgttgaaagaaactacacgtagatcaatgcgga |
109 |
Q |
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| T |
8458140 |
agatgaaatatgatccttttagtgccaaaagttgagcacacattgtttaccacttttggaccctacttgttgaaagaaactacacgtagatcaatgcgga |
8458041 |
T |
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| Q |
110 |
cttgtgagacatgtcttgaagttgagctatcaaaagaggatacaagagaatccgaaagtgttttgaaagtgtggataaagtagtaagaaaataaattaca |
209 |
Q |
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| T |
8458040 |
cttgtgagacatgtcttgaagttgagctatcaaaagaggatacaagagaatccaaaagtgttttgaaagtgtggataaagtagtaagaaaataaattaca |
8457941 |
T |
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| Q |
210 |
ctaaagttcttgatttcaattcttgcgtnnnnnnnngaacattgatatgcatgctaattttcaagtctttgaatatgtaagaatcaatttggtttagcaa |
309 |
Q |
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| T |
8457940 |
ctaaagttcttgatttcaattcttgcgtaaaaaaaagaacattgatatgcatgttaattttcaagtccttgaatatgtaagaatcaatttggtttagcca |
8457841 |
T |
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| Q |
310 |
cattatctcacgattgatgttttgatgacaacaaaacaaatgaaaaatttgtctactaacgccgtgttcaagccgtaagaaataagtaataacaaaagag |
409 |
Q |
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| T |
8457840 |
cattatctcacgattgatgttttgatgacagcaaaacaaatgaaaaatttatctactaacgccgtgttcaagccgtaagaaataagtaataacaaaagag |
8457741 |
T |
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| Q |
410 |
agtcaacaat |
419 |
Q |
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| T |
8457740 |
agtcaacaat |
8457731 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 32652123 - 32652169
Alignment:
| Q |
323 |
ttgatgttttgatgacaacaaaacaaatgaaaaatttgtctactaac |
369 |
Q |
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| T |
32652123 |
ttgatgttttgatgataacaaaacaaataaataatttgtctgctaac |
32652169 |
T |
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