View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_high_17 (Length: 414)
Name: NF13999_high_17
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 5522895 - 5523293
Alignment:
| Q |
1 |
ccgtgtgccgtaaggcaaagggctcataagtcataacacagaaaatgtactataatataatctaatctatatagtactcactagctagttatccatcttt |
100 |
Q |
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| T |
5522895 |
ccgtgtgccgtaaggcaaagggctcataagtcataacacaaaaaatgtactataatataatctaatctatatagtactcactagctagttatccatcttt |
5522994 |
T |
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| Q |
101 |
agcataatgaagaatctcctaacataaatttaccatttagtagggaacaatatgaaccataaagtttatgtcaactatagtattttgagaaatattttgc |
200 |
Q |
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| T |
5522995 |
agcataatgaagaatctactaacataaatttaccatttagtagggaacaatatgaatcataaagtttatgtcaactatagtattttgagaaatattttgc |
5523094 |
T |
|
| Q |
201 |
acacgtaatggatttgtaagcttcacttcagctacagtatctaagccactaattaatagtgatgatgtgatgactttttagtttacgtacggaaaatgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5523095 |
acacgtaatggatttgtaagcttcacttcagctacagtatctaagccactaattaatagtgatgatgtgatgactttttagtttacgtacggaaaatgtt |
5523194 |
T |
|
| Q |
301 |
taattaaggtatgctattgccgcaatttatgaggatgtggaagatattaattcaataggtttcttaagatggaaaactattaactgacctatactttat |
399 |
Q |
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| T |
5523195 |
taattaaggtatgctattgccgcaatttatgaggatgtggaagatattaattcaataggtttcttaagatggaaaactattaactgacctatactttat |
5523293 |
T |
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