View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_high_28 (Length: 286)
Name: NF13999_high_28
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 14878534 - 14878268
Alignment:
| Q |
1 |
cggtggcaattttgtgcacgacacacaatacttgaatgataaacgtccaatgaatctaatctatattcaatgcagtggattttcttctgatccattccaa |
100 |
Q |
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| T |
14878534 |
cggtggcaattttgtgtacgacacacaatacttgaatgataaacgtccaatgaatctaatctatattcaatgcactggattttcttctgatccattccaa |
14878435 |
T |
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| Q |
101 |
atttcacatattttcctgactcattgatatacgatcaccgctcccaaaacatgtctgctttataacttttttggcagtgttatcgacatgattttatcag |
200 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14878434 |
atttcacatattttcgtgactctttgatatacgatcaccgctcccaaaacatgtcttctttataacttttttggcagtgttatcgacattattttatcag |
14878335 |
T |
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| Q |
201 |
ttttcatctcttggttggagcacaatgaggtgttgttcttctattggtatcattctatagactattt |
267 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14878334 |
ttttcatctcttgtttggagcacaatgaggtgttgttcttctattggtatcattctatagactattt |
14878268 |
T |
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