View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13999_high_37 (Length: 235)
Name: NF13999_high_37
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_high_37 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 100 - 220
Target Start/End: Original strand, 38965973 - 38966093
Alignment:
| Q |
100 |
actaagaaatcaaattaaaccggttacaattggaatttctggtaaaacaatgagatgacagaacatgaggcttgaattagaatttgcaaaagtagtacaa |
199 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38965973 |
actaagaaatcaaattaaactggttacaattggaatttctggtaaaacaatgagatgacagaacatgaggcttgaattagaattagcaaaagtagtacaa |
38966072 |
T |
|
| Q |
200 |
ttgcagataaaaaagatgtta |
220 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
38966073 |
ttgcagataaaaaatatgtta |
38966093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 38965578 - 38965681
Alignment:
| Q |
1 |
atatatgacgtagatgtactaattttttcaaggagcacgccacgccaatgattacattttcattgagcatgtggctcatgatttggtttacattgagcaa |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
38965578 |
atatatgaagtagatgtactaattttttcaaggagcacgccacaccaatgattacattttcattgagcatatggctcatgatttggattacattgagcaa |
38965677 |
T |
|
| Q |
101 |
ctaa |
104 |
Q |
| |
|
|||| |
|
|
| T |
38965678 |
ctaa |
38965681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 15006328 - 15006242
Alignment:
| Q |
133 |
aatttctggtaaaacaatgagatgacagaacatgaggcttgaattagaatttgcaaaagtagtacaattgcagataaaaaagatgtt |
219 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| ||||||||||||| || |||||||||| ||||||| |||||||||||||| |
|
|
| T |
15006328 |
aattactggtaaaataatgagatgacagaacaattggcttgaattagatttagcaaaagtagctaaattgcatataaaaaagatgtt |
15006242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 52590427 - 52590344
Alignment:
| Q |
138 |
ctggtaaaacaatgagatgacagaacatgaggcttgaattagaatttgcaaaagtagtacaattgcagataaaaaagatgttatt |
222 |
Q |
| |
|
|||||||||||| ||||| |||||||||| ||||||||| | | | ||||| ||||||||||||||| ||||||| |||||||| |
|
|
| T |
52590427 |
ctggtaaaacaaagagatcacagaacatgtggcttgaatcatagtcagcaaatgtagtacaattgcagctaaaaaa-atgttatt |
52590344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University