View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_high_7 (Length: 524)
Name: NF13999_high_7
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 16 - 488
Target Start/End: Original strand, 27576104 - 27576570
Alignment:
| Q |
16 |
atcacaaagcaagaagatatgagttgattattccttacaacctccgcaaaaaacaaaatctcttgaactctcctggtggaaagcattacgccgcgctaaa |
115 |
Q |
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| T |
27576104 |
atcacaaagcaagaagatatgagttgatgattccttacaacctccgcaaaaatcacaatctcttgaa-------ggtggaaagcattacgccgcgctaaa |
27576196 |
T |
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| Q |
116 |
tttcctc-atttggaacataataaagaagaagttgccaagaaaaagacttgttcttcctcaactcaattgtcccttcaaacacatgcaactccttccgac |
214 |
Q |
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| T |
27576197 |
tttcctccagttggaacataataaagaagaagttgccaagaaaaagacttgttcttcctcaactcaattgtcccttcaaacacatgcaactccttccaac |
27576296 |
T |
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| Q |
215 |
aatttgtaagtcgacccaaagtgtttgttaagcttcatctttgtatgtaatagctttagcatttatgtcatctttctatgcatcagcatttttcttcatc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |
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| T |
27576297 |
aatttgtaagtcgacccaaagtgtttgttaagcttcatctttgtatgtaatagctttagcatttatatcatctttttatgcatcggcatttttcttcatc |
27576396 |
T |
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| Q |
315 |
ttcttaatcttgatcttattatcctgcaaacaatttcttgaggctttttatatggaaaatcaatcaacagaatggctggtttttctagttatgaggagaa |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
27576397 |
ttcttaatcttgatcttattatcctgcaaacaatttcttgaggctttttatatggaaaatcaatcaatagaatgcctggtttttctagttatgaggagaa |
27576496 |
T |
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| Q |
415 |
acgttcagttttcatcggcatgccttttcaccagcagtgaggctccaggggaaaagaagggattgacacaaaat |
488 |
Q |
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| T |
27576497 |
acgttcagttttcatcggcatgccttttcaccagccgtgaggctccaggggagaagaagggattgacacaaaat |
27576570 |
T |
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