View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_low_11 (Length: 480)
Name: NF13999_low_11
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 271 - 466
Target Start/End: Original strand, 51762351 - 51762546
Alignment:
| Q |
271 |
gcaaaagacaagatgcaaatcaatgtttttgtatgctgttttttatatgttggcttagctaatgttaaatattttgatttcttataaattgttcagtttt |
370 |
Q |
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| T |
51762351 |
gcaaaagacaagatgcaaatcaatgtttttgtatgctgttttttatatgttggcttagctaatgttaaatattttgatttcttataaattgttcagtttt |
51762450 |
T |
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| Q |
371 |
ttaattactagctccttttgatcacaataatcgacctattcataaaaataattattcttaaatgcttgttgagattatagataaatatgagatgag |
466 |
Q |
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| T |
51762451 |
ttaattactagctccttttgatcacaataatcgacctattcataaaaataattattcttaaatgcttgtagagattatagataaatatgagatgag |
51762546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 51762085 - 51762289
Alignment:
| Q |
1 |
ttggaggtgaaaagaaaagttaccgatgcatctatgtttataagtaacgctctctacttgatcaatcgtcttggggaaagcatgaatcataagcctcact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51762085 |
ttggaggtgaaaagaaaagttaccgatgcatctatgtttataagtaacgctctctacttgatcaatcgtcttggggaaagcatgaatcaaaagcctcact |
51762184 |
T |
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| Q |
101 |
ccaattccaataactgnnnnnnnnnnnnnnnnnnnnnnagtcaagtttctgattttgtgttgttcttgtatcgttgactatgttgacataacttagtgtg |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51762185 |
ccaattccaataactg----atgcatgcatgcatgcatagtcaagtttctgattttgtgttgttcttgtatcgttgactatgttgacataacttagtgtg |
51762280 |
T |
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| Q |
201 |
tatgaaaaa |
209 |
Q |
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||||||||| |
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| T |
51762281 |
tatgaaaaa |
51762289 |
T |
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