View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_low_16 (Length: 418)
Name: NF13999_low_16
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 14878939 - 14878706
Alignment:
| Q |
9 |
gaagaatattggtgaaatgaagagaatgttttgagcttgaatagcttaattcttttcttgcaagtaattctcttaatgtttaaagttgagtacgtgtgta |
108 |
Q |
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| T |
14878939 |
gaagaatattggtgaaatgaagagaatgttttgagcttgaatagcttaattcttttcttgcaaataattctcttaatgtttaaagttgagtacgtgtgta |
14878840 |
T |
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| Q |
109 |
tttgtatgagcctttaggctttaaaattgtagagcactaagctataaccgttggaggcttgttgaggtgtctagtccttgttcaagagagagaattagtt |
208 |
Q |
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| T |
14878839 |
tttgtatgagcctttaggctttaaaattgtagagcagtaagctataaccgttggaggcttgttgaggtgtctagtccttgttcaagagagagaattagtt |
14878740 |
T |
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| Q |
209 |
cacgtttcaatcatactattttttgtattcatat |
242 |
Q |
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| T |
14878739 |
cacgtttcaatcatactattttttgtattcatat |
14878706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 226 - 418
Target Start/End: Complemental strand, 14878691 - 14878493
Alignment:
| Q |
226 |
attttttgtattcatatcatcataacatttgttacaagttgtacnnnnnnnn-tataacataattagaaataaaggaaaattaatactaatgaatatttg |
324 |
Q |
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| T |
14878691 |
attttttgtattcatatcatcataacatttgttacaagttgtacaaaaaaaaatataacataattagaaataaaggaaaattaatactaatgaatatttg |
14878592 |
T |
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| Q |
325 |
aaataggtccttaa----nnnnnnnnnnaaaaggg-ttatatatttagaaacataggcggtggcaattttgtgcaagacacacaatacttgaatgataa |
418 |
Q |
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| T |
14878591 |
aaataggtccttaagattttttttttttaaaagggtttatatatttagaaacataggcggtggcaattttgtgtacgacacacaatacttgaatgataa |
14878493 |
T |
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