View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_low_2 (Length: 728)
Name: NF13999_low_2
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 14702511 - 14702853
Alignment:
| Q |
11 |
cagagaagagacaaagaacaccatcagcttataaccgcttcatcaagtaattaatatgttacattaacaaaagttacacttatcataaacttgtaaattt |
110 |
Q |
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| T |
14702511 |
cagagaagagacaaagaacaccatcagcttataaccgcttcatcaagtaattaatatgtcacattaacaaaagttacacttatcataaacttgtaaattt |
14702610 |
T |
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| Q |
111 |
tttaattctaatattatgagtataattttaatgcagagaagagattaaaaggctaaaggctaaaaaccctgatatggctcacaaggaagcttttagtaca |
210 |
Q |
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| T |
14702611 |
tttaattctaatattttgagtataattttaatgcagagaagagattaaaaggctaaaggctaaaaaccctgatatggctcacaaggaagcttttagtaca |
14702710 |
T |
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| Q |
211 |
gctgcaaaaaatgtaaggtctaattttcaaaatcacatgattatatattgcaaaaccatgttcaaaactaactagctattagttcaactcatttgaaaac |
310 |
Q |
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| T |
14702711 |
gctgcaaaaaatgtaaggtctaattttcaaaatcacatgattatatattgcagaaccatgttcaaaactaactagctattagttccactcattt-aaaac |
14702809 |
T |
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| Q |
311 |
tataggaaattttataagattggtgaattattcataatcttgga |
354 |
Q |
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| T |
14702810 |
tataggaaattttataagattggtgaattattcataatcttgga |
14702853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 378 - 713
Target Start/End: Original strand, 14702872 - 14703207
Alignment:
| Q |
378 |
tttcagtgggctaattgccccccaactcagtgcaaaggagatgaagagagctgtagccagacagatcaatttgtggatcttgactcccaagtggacccca |
477 |
Q |
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| T |
14702872 |
tttcagtgggctaattgccccccaactcagtgcaaaggagatgaagagagctgtagccagacagatcaatttgtggatcttgactcccaagtggacccca |
14702971 |
T |
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| Q |
478 |
atgaagctgaggtaaaaacataattatttgaagattaattaactaagttgttttcttataattgacatttaagaattattttagcttattaaaacttgct |
577 |
Q |
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| T |
14702972 |
atgaagcagaggtaaaaacataattatttgaagattaattatctaagttgttttcttataattcacatttaagaattattttagcttattaaaacttgct |
14703071 |
T |
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| Q |
578 |
ataagtaggagattctttaggtttggcactgtgtgcatttatagtggtacttgtccctttctttatatcacatggtgaatagtaaaggtatagtccatgc |
677 |
Q |
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| T |
14703072 |
ataagtaggagattctttaggtttggcactgtgtgcatttatagtggtacttgtccctttctttatatcacatggtgaatagtaaaggtatagtccatgc |
14703171 |
T |
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| Q |
678 |
attcaatggcaaagacttaatatcctcatgttgttg |
713 |
Q |
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| T |
14703172 |
attcaatggtaaagactttataccctcatgttgttg |
14703207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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