View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_low_20 (Length: 394)
Name: NF13999_low_20
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 117 - 336
Target Start/End: Original strand, 35241154 - 35241373
Alignment:
| Q |
117 |
ttgtttattgatacacatagcaatctatacccagcttactataatagtatatgcaattagaggtgtaattgagttattcatggaactacggtccaaaata |
216 |
Q |
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| T |
35241154 |
ttgtttattgatatacatagcaatctatactcagcttacaataatagcatctgcaattagagggttgtctgaggtgttcatggaactacattccataa-a |
35241252 |
T |
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| Q |
217 |
tatacagaggaaaattagagtatatagcaatcttaaaattgaaagtagactaaatatagggaaattacaattgacta-ttttttcctgataacattaagt |
315 |
Q |
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| T |
35241253 |
tatttagtgggaaattagagtatataacaatcttaaaattggaagtaagcaaagtatagggaaattacagtcgactatttttttcttgattacattaaat |
35241352 |
T |
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| Q |
316 |
gccataatctggatttggtac |
336 |
Q |
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|||||||||| ||||||||| |
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| T |
35241353 |
cccataatctgaatttggtac |
35241373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 394
Target Start/End: Complemental strand, 24820293 - 24820258
Alignment:
| Q |
359 |
cacactatcaaagactttactcattttaaaagaaaa |
394 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
24820293 |
cacactatcaaagactttactcattttaaaagaaaa |
24820258 |
T |
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