View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13999_low_21 (Length: 393)
Name: NF13999_low_21
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 41659757 - 41660112
Alignment:
| Q |
17 |
tacttgttgaagaaagatatgtcgatgtcagggatgtggggtgtccatggaccaattaaaaacccacctaaaagagcaaggatcccaattattcttccaa |
116 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41659757 |
tacttgttgaagaaagatatgttaatgt-agggatgtggggtgtccatggaccaattaaaaacccacctaaaagagcaaggatcccaattattcttccaa |
41659855 |
T |
|
| Q |
117 |
cctttatagctgtatacccttaattttcttacatttattaaacactagctcattttctctctatttctctttctatcgtatatttcacatcattagtcgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41659856 |
cctttatagctgtatacccttaattttcttacatttattaaacactagctcattttctctctatttctctttctatcgtatatttcacatcattagtcgt |
41659955 |
T |
|
| Q |
217 |
taccactatttctatctctcttggtgtagaatggttaatgttacattattcttttcttgaaagcttaaaaattagttttaaacttaaaacatgaaggtaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41659956 |
taccactatttctatctctcttggtgtagaatggttaatgttacattattcttttcttgaaagcttaaaaattagttttaaacttaaaacatgaaggtaa |
41660055 |
T |
|
| Q |
317 |
aaccatgcctgctattatttcagtttaacattatttccggattgatgttttgggttt |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41660056 |
aaccatgcctgctattatttcagtttaacattatttccggattgatgttttgggttt |
41660112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University