View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_low_22 (Length: 342)
Name: NF13999_low_22
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 20 - 332
Target Start/End: Original strand, 24811959 - 24812271
Alignment:
| Q |
20 |
aatcggaaaacaactgagccatttcattgacttgagactcacttgaaacccctaatagttgattaaccattaaatttatagctacctgcattaaatcatg |
119 |
Q |
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| T |
24811959 |
aatcggaaaacaactgagccatttcattgacttgagactcacttgaaacccctaatagttgattaaccattaaatttatagctacctgcattaaatcatg |
24812058 |
T |
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| Q |
120 |
ttccgcgataaatttctcataattgaaaataaaaatgttgttagaaagtaaatggatcgttacctttctacaaacatcttggagaagaattacttgttgg |
219 |
Q |
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| T |
24812059 |
ttccgcgataaatttctcataattgaaaatgaaaatgttgttagaaagtaaatggatcgttacctttctacaaacatcttggagaagaattacttgttgg |
24812158 |
T |
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| Q |
220 |
tttttgaaattgctcaaagtttggatcatgacattttgtatatcattcatgaaatggaacttaagcttatctaatcgcatcatattggacgcgattccat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24812159 |
tttttgaaattgctcaaagtttggatcatgacattttgtatatcattcatgaaatggaacttaagcttatctaatcgcatcatattggacgcgattccat |
24812258 |
T |
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| Q |
320 |
gtagtttcctttg |
332 |
Q |
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||||||||||||| |
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| T |
24812259 |
gtagtttcctttg |
24812271 |
T |
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