View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13999_low_23 (Length: 335)

Name: NF13999_low_23
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13999_low_23
NF13999_low_23
[»] chr7 (14 HSPs)
chr7 (180-325)||(20090564-20090709)
chr7 (18-275)||(20293045-20293302)
chr7 (33-136)||(20090466-20090569)
chr7 (18-329)||(20063917-20064213)
chr7 (18-275)||(20302247-20302504)
chr7 (49-275)||(20287674-20287903)
chr7 (77-265)||(20169502-20169690)
chr7 (18-329)||(20300120-20300431)
chr7 (22-247)||(20242064-20242289)
chr7 (77-329)||(20272184-20272436)
chr7 (144-271)||(20277986-20278113)
chr7 (144-328)||(20282507-20282693)
chr7 (135-247)||(20262697-20262809)
chr7 (49-275)||(20230086-20230312)
[»] chr4 (2 HSPs)
chr4 (49-275)||(40825238-40825464)
chr4 (74-275)||(40820595-40820796)


Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 20090564 - 20090709
Alignment:
Q  180 cattcatatatgctcgtaggttcaaatcctctcaaacaaatgcatatcggtgagttcaatgaattacacgttgcaaatgccccacaaataccataacgat 279  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  20090564 cattaatatatgctcgtaggttcaaatcctctcaaacaaatgcatatcggtgagttcaattaattacacgttgcaaatgccccacaaatgccataacgat 20090663  T
Q  280 cgtactatgacttttggctagtccatgtaactagcacttatttctt 325  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  20090664 cgtactatgacttttggcttgtccatgtaactagcacttatttctt 20090709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 20293302 - 20293045
Alignment:
Q  18 catatgtcaggtgtcacagctattccttctacaaaatcaggtattttaaccatcttcaatttcaaaaacccatcttcctttgtatttgtggttttgttgt 117  Q
    ||||| || ||||| |||||||  |||||| ||||||| || | |||||||||||||||||||||||||||||||||||||||| | |||||||| ||||    
T  20293302 catatttctggtgtaacagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgt 20293203  T
Q  118 taaccttttgacacattaaaggtttcctcctagcacatccaccagtccagttatttctactccattcatatatgctcgtaggttcaaatcctctcaaaca 217  Q
    | ||| ||| ||||   |||||| |||||||| |||| ||||| ||||| |||| | |||||||||| | |||| |  | ||| ||||||||||||||||    
T  20293202 tgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaaca 20293103  T
Q  218 aatgcatatcggtgagttcaatgaattacacgttgcaaatgccccacaaataccataa 275  Q
      | ||||| |||||| |||||||| ||||  ||||||| |||||||| |||||||||    
T  20293102 gctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataa 20293045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 20090466 - 20090569
Alignment:
Q  33 acagctattccttctacaaaatcaggtattttaaccatcttcaatttcaaaaacccatcttcctttgtatttgtggttttgttgttaaccttttgacaca 132  Q
    |||||||  |||||| ||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20090466 acagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtatttgtggttttgttgttaaccttttgacaca 20090565  T
Q  133 ttaa 136  Q
    ||||    
T  20090566 ttaa 20090569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 20063917 - 20064213
Alignment:
Q  18 catatgtcaggtgtcacagctattccttctacaaaatcaggtattttaaccatcttcaatttcaaaaacccatcttcctttgtatttgtggttttgttgt 117  Q
    |||||||| |||||| ||||||||||   | |||||||||| | ||||||||||||||||||||||||||||||||| |||||| ||     ||||||      
T  20063917 catatgtccggtgtctcagctattccacttgcaaaatcaggaactttaaccatcttcaatttcaaaaacccatcttcttttgtactt-----tttgtt-- 20064009  T
Q  118 taaccttttgacacattaaaggtttcctcctagcacatccaccagtccagttatttctactccattcatatatgctcgtaggttcaaatcctctcaaaca 217  Q
            | |||  | || | | |||||||| |||| ||||| |||||||| |||||| ||||||| | ||||||| |||||||||||||| |||||||    
T  20064010 --------tcacatttcaatgatgtcctcctaacacacccacctgtccagttgtttctattccattcctgtatgctcctaggttcaaatcctttcaaaca 20064101  T
Q  218 aatgcatatcggtgagttcaatgaattacacgttgcaaatgccccacaaataccataacgatcgtactatgacttttggctagtccatgtaactagcact 317  Q
      ||||||| |||| |||||||||| ||||  ||||||||||||||||  |||||||   |||  ||| ||| ||| ||||||||||||||||| |||||    
T  20064102 gctgcatattggtgtgttcaatgaactacagcttgcaaatgccccacatgtaccatatacatcacactctgattttcggctagtccatgtaacttgcact 20064201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 20302504 - 20302247
Alignment:
Q  18 catatgtcaggtgtcacagctattccttctacaaaatcaggtattttaaccatcttcaatttcaaaaacccatcttcctttgtatttgtggttttgttgt 117  Q
    ||||| || ||||| |||||||  |||||| ||||||| || | ||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||||    
T  20302504 catatatctggtgtaacagctacaccttctgcaaaatcgggaactttaaccatctgcaatttcaaaaacccatcttcttttgtacttgtggttttattgt 20302405  T
Q  118 taaccttttgacacattaaaggtttcctcctagcacatccaccagtccagttatttctactccattcatatatgctcgtaggttcaaatcctctcaaaca 217  Q
    | ||| ||| ||||   |||| | | |||||| |||| |||| |||||| || |||||| ||||||| | |||| |  | || ||||| ||| |||||||    
T  20302404 tgaccctttcacactgcaaagatcttctcctaacacacccactagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaaca 20302305  T
Q  218 aatgcatatcggtgagttcaatgaattacacgttgcaaatgccccacaaataccataa 275  Q
      |||| || || | | |||||||||||||  ||||||||||||| ||||||||||||    
T  20302304 gctgcaaattggcgtgctcaatgaattacaaattgcaaatgccccgcaaataccataa 20302247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 275
Target Start/End: Complemental strand, 20287903 - 20287674
Alignment:
Q  49 caaaatcaggtattttaaccatcttcaatttcaaaaacccatcttcctt---tgtatttgtggttttgttgttaaccttttgacacattaaaggtttcct 145  Q
    |||||||||| | |||||||||||||||||||||||| |||||||||||   |||| ||||||| || || || ||| ||| ||||   ||| || ||||    
T  20287903 caaaatcaggaactttaaccatcttcaatttcaaaaatccatcttccttctttgtacttgtggtgttattattgaccctttcacactgcaaaagtatcct 20287804  T
Q  146 cctagcacatccaccagtccagttatttctactccattcatatatgctcgtaggttcaaatcctctcaaacaaatgcatatcggtgagttcaatgaatta 245  Q
     ||| |||| |||||||||||||| | |||| |||| || | | || || | ||||||||||||||||||||| ||||||| ||| | ||||||||| ||    
T  20287803 tctaacacacccaccagtccagttgtgtctattccactcctgtttgttcctgggttcaaatcctctcaaacaactgcatattggtaacttcaatgaacta 20287704  T
Q  246 cacgttgcaaatgccccacaaataccataa 275  Q
    ||  |||| ||||||||||| |||||||||    
T  20287703 cagcttgcgaatgccccacatataccataa 20287674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 77 - 265
Target Start/End: Original strand, 20169502 - 20169690
Alignment:
Q  77 tttcaaaaacccatcttcctttgtatttgtggttttgttgttaaccttttgacacattaaaggtttcctcctagcacatccaccagtccagttatttcta 176  Q
    ||||||||||||||||||||||||| |||||||||| ||||| ||| ||| ||||   |||||| |||| | | |||| ||||| |||||||||| | ||    
T  20169502 tttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaaggtgtccttcgaacacacccaccggtccagttatgtata 20169601  T
Q  177 ctccattcatatatgctcgtaggttcaaatcctctcaaacaaatgcatatcggtgagttcaatgaattacacgttgcaaatgccccaca 265  Q
     ||||||  | |||| |  | |||||||| |||||||||||  | ||| | |||||| |||||||||||||  ||||||||||||||||    
T  20169602 ttccattgttctatgtttctgggttcaaaccctctcaaacagctacatgttggtgagctcaatgaattacaacttgcaaatgccccaca 20169690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 20300431 - 20300120
Alignment:
Q  18 catatgtcaggtgtcacagctattccttctacaaaatcaggtattttaaccatcttcaatttcaaaaacccatcttcctttgtatttgtggttttgttgt 117  Q
    |||||||| ||||  |||||||  |||||| |||| ||||| | ||||||||||| |||| ||||||| ||||||||||||||| | |||||||| ||||    
T  20300431 catatgtctggtgcaacagctacaccttctgcaaattcaggaactttaaccatctgcaatatcaaaaatccatcttcctttgtactggtggttttattgt 20300332  T
Q  118 taaccttttgacacattaaaggtttcctcctagcacatccaccagtccagttatttctactccattcatatatgctcgtaggttcaaatcctctcaaaca 217  Q
    | ||| ||| ||||   |||| | |||||||  |||| ||||||||||| || |||||| ||||||| | |||   | | ||||||||| || |||||||    
T  20300331 tgaccctttaacactgaaaagctgtcctcctgacacacccaccagtccaattgtttctattccattcttgtatcgacttgggttcaaattctttcaaaca 20300232  T
Q  218 aatgcatatcggtgagttcaatgaattacacgttgcaaatgccccacaaataccataacgatcgtactatgacttttggctagtccatgtaactagcact 317  Q
      |||| || |||||  | | |||| ||||  |||||||| |||| || |||||||||| |||  ||| |||     | ||||||||||||||| |||||    
T  20300231 ggtgcaaattggtgaacttagtgaactacagcttgcaaataccccgcatataccataaccatcacactctgaaacccgactagtccatgtaacttgcact 20300132  T
Q  318 tatttcttctca 329  Q
    || ||| |||||    
T  20300131 taattcctctca 20300120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 20242289 - 20242064
Alignment:
Q  22 tgtcaggtgtcacagctattccttctacaaaatcaggtattttaaccatcttcaatttcaaaaacccatcttcctttgtatttgtggttttgttgttaac 121  Q
    |||||||||| || ||||  |||||  ||||||| || | |||||||||||  | ||||| |||||||||||||||| || |||||||||| ||| | ||    
T  20242289 tgtcaggtgtaactgctaaaccttcagcaaaatctggaactttaaccatctgtagtttcagaaacccatcttcctttctacttgtggttttattggtgac 20242190  T
Q  122 cttttgacacattaaaggtttcctcctagcacatccaccagtccagttatttctactccattcatatatgctcgtaggttcaaatcctctcaaacaaatg 221  Q
    | ||| |||||  |||||| ||  |||| |||| || ||||||||||| |||||||||||||||    |  |  | |||||||||||| |||||||| ||    
T  20242189 ccttttacacagcaaaggtctctgcctaacacacccgccagtccagttgtttctactccattcacgagtatttctgggttcaaatcctttcaaacaactg 20242090  T
Q  222 catatcggtgagttcaatgaattaca 247  Q
    || |  |||||| |||||||||||||    
T  20242089 caaactggtgagctcaatgaattaca 20242064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 329
Target Start/End: Complemental strand, 20272436 - 20272184
Alignment:
Q  77 tttcaaaaacccatcttcctttgtatttgtggttttgttgttaaccttttgacacattaaaggtttcctcctagcacatccaccagtccagttatttcta 176  Q
    |||||||| |||||||||||||||| |||||||||| ||||  ||| |||  |||   |||||| || ||||| |||| ||||||| |||||| ||| |     
T  20272436 tttcaaaatcccatcttcctttgtacttgtggttttattgtggaccctttcgcactgcaaaggtgtcttcctaacacacccaccagaccagttgtttatt 20272337  T
Q  177 ctccattcatatatgctcgtaggttcaaatcctctcaaacaaatgcatatcggtgagttcaatgaattacacgttgcaaatgccccacaaataccataac 276  Q
     ||||||||  |||  |  |||||||||||||| ||| |||  ||||||| |||||| || ||||| ||||  |||||||||| ||||| |||||||||     
T  20272336 ttccattcacgtatatttttaggttcaaatcctttcagacagctgcatattggtgaggtcgatgaactacagattgcaaatgcgccacatataccataaa 20272237  T
Q  277 gatcgtactatgacttttggctagtccatgtaactagcacttatttcttctca 329  Q
     |||  ||| ||| | | |||| |||||||||||  | |||| ||||||||||    
T  20272236 catcacactctgaatctcggcttgtccatgtaacatgaacttctttcttctca 20272184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 20278113 - 20277986
Alignment:
Q  144 ctcctagcacatccaccagtccagttatttctactccattcatatatgctcgtaggttcaaatcctctcaaacaaatgcatatcggtgagttcaatgaat 243  Q
    |||||| |||| ||||| |||||||||| || | ||||||| | |||| |  |||||||||||||||||| ||| || ||||| ||||||  |||||||     
T  20278113 ctcctaacacacccaccggtccagttatgtccattccattcttgtatgtttctaggttcaaatcctctcagacagatacatattggtgagaacaatgaac 20278014  T
Q  244 tacacgttgcaaatgccccacaaatacc 271  Q
    ||||  |||||||||||||||| |||||    
T  20278013 tacagcttgcaaatgccccacatatacc 20277986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 144 - 328
Target Start/End: Complemental strand, 20282693 - 20282507
Alignment:
Q  144 ctcctagcacatccaccagtccagttatttctactccattcatatatgctcgtaggttcaaatcctctcaaacaaa--tgcatatcggtgagttcaatga 241  Q
    |||||| |||| ||||| |||||||||| | || ||||||| | |||| |  |||||||||||||||||| ||| |  | ||||| ||||||  ||||||    
T  20282693 ctcctaacacacccaccggtccagttatgtatattccattcttgtatgtttctaggttcaaatcctctcagacagagatacatattggtgagaccaatga 20282594  T
Q  242 attacacgttgcaaatgccccacaaataccataacgatcgtactatgacttttggctagtccatgtaactagcacttatttcttctc 328  Q
    ||||||  |||||||||||||||| |||||||||  |||  ||| ||| | ||||||  |||||||||| |  |||| |||||||||    
T  20282593 attacagcttgcaaatgccccacatataccataagcatcacactctgagtcttggcttctccatgtaacaataacttctttcttctc 20282507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 247
Target Start/End: Complemental strand, 20262809 - 20262697
Alignment:
Q  135 aaaggtttcctcctagcacatccaccagtccagttatttctactccattcatatatgctcgtaggttcaaatcctctcaaacaaatgcatatcggtgagt 234  Q
    |||||| ||| |||| |||| || ||||||||||| |||||||||||||||    |  |  | |||||||||||| |||||||| |||||| |||||||     
T  20262809 aaaggtctccgcctaacacacccgccagtccagttgtttctactccattcacgagtatttctgggttcaaatcctttcaaacaactgcataccggtgagc 20262710  T
Q  235 tcaatgaattaca 247  Q
    |||||||||||||    
T  20262709 tcaatgaattaca 20262697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 275
Target Start/End: Complemental strand, 20230312 - 20230086
Alignment:
Q  49 caaaatcaggtattttaaccatcttcaatttcaaaaacccatcttcctttgtatttgtggttttgttgttaaccttttgacacattaaaggtttcctcct 148  Q
    ||||||| || | |||||||||||  | |||||||||||| ||||||||| ||  ||||||||| |||   | | ||| ||||   || ||||||| |||    
T  20230312 caaaatctggaactttaaccatctgtagtttcaaaaacccgtcttcctttctacctgtggttttattgccgatccttttacactgcaatggtttccgcct 20230213  T
Q  149 agcacatccaccagtccagttatttctactccattcatatatgctcgtaggttcaaatcctctcaaacaaatgcatatcggtgagttcaatgaattacac 248  Q
    | |||| || ||||||||||| |||||| ||||||| | |||| ||   || ||||| ||| |||||||  |||| || || | | |||||||||||||     
T  20230212 aacacacccgccagtccagttgtttctattccattcctgtatgttcaccggatcaaaccctttcaaacagctgcaaattggcgtgctcaatgaattacag 20230113  T
Q  249 gttgcaaatgccccacaaataccataa 275  Q
     ||| |||||||||||| | |||||||    
T  20230112 cttgtaaatgccccacatagaccataa 20230086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 49 - 275
Target Start/End: Original strand, 40825238 - 40825464
Alignment:
Q  49 caaaatcaggtattttaaccatcttcaatttcaaaaacccatcttcctttgtatttgtggttttgttgttaaccttttgacacattaaaggtttcctcct 148  Q
    |||||||||| | ||||||||||| |||||||||||||||||||||||||||| |||| || || || || ||||||| ||||   ||| || |||| ||    
T  40825238 caaaatcaggaactttaaccatctgcaatttcaaaaacccatcttcctttgtacttgttgtcttattattgaccttttcacactgcaaaagtgtccttct 40825337  T
Q  149 agcacatccaccagtccagttatttctactccattcatatatgctcgtaggttcaaatcctctcaaacaaatgcatatcggtgagttcaatgaattacac 248  Q
    | |||| ||||| |||||||| | |||| |||| || | | || || | ||||||||||||||||||||| ||||||||||| | ||||||||| ||||     
T  40825338 aacacacccacctgtccagttgtgtctattccactcctgtttgttcctgggttcaaatcctctcaaacaactgcatatcggtaacttcaatgaactacag 40825437  T
Q  249 gttgcaaatgccccacaaataccataa 275  Q
     ||| |||||||||||| |||||||||    
T  40825438 cttgaaaatgccccacatataccataa 40825464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 275
Target Start/End: Original strand, 40820595 - 40820796
Alignment:
Q  74 caatttcaaaaacccatcttcctttgtatttgtggttttgttgttaaccttttgacacattaaaggtttcctcctagcacatccaccagtccagttattt 173  Q
    ||||||||||||||||| |||||||||| | |||||||| ||| | | | ||| ||||   |||||| |||||||| |||| | ||| ||||| |||| |    
T  40820595 caatttcaaaaacccattttcctttgtactcgtggttttattgctgatcctttcacactccaaaggtgtcctcctaacacaccgacccgtccaattatgt 40820694  T
Q  174 ctactccattcatatatgctcgtaggttcaaatcctctcaaacaaatgcatatcggtgagttcaatgaattacacgttgcaaatgccccacaaataccat 273  Q
     |||||||||| | |||| |  | ||| |||||||||| |||||  | ||||| || ||| ||||| || ||||  ||||||||||  |||| |||||||    
T  40820695 atactccattcttctatgtttctgggtacaaatcctctaaaacagctacatattggcgagctcaataaactacagcttgcaaatgctgcacatataccat 40820794  T
Q  274 aa 275  Q
    ||    
T  40820795 aa 40820796  T

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