View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_low_24 (Length: 323)
Name: NF13999_low_24
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 21 - 310
Target Start/End: Original strand, 27688729 - 27689018
Alignment:
| Q |
21 |
ccgattgcttcatgttcaagaatcatcacttgtggagaccaacctcttataattagtccttttccttccgttctttcctcgaatccttcaggtagccatt |
120 |
Q |
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| T |
27688729 |
ccgattgcttcatgttcaagaatcatcacttgtggagaccaacctcttataattagtccttttccttccgttctttcctcgaatccttcaggtagccatt |
27688828 |
T |
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| Q |
121 |
catctccatcttctttctgtgtcctcacaacccaaataaaattatgccctgatgcttcgagtcccatagcaatttccttaagctgagagttaaggaagtg |
220 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27688829 |
catctccatcttctgtctgtgtcctcacaacccaaataaaattatgccctgatgcttcgagtcccatagcaatttccttaagctgagagttaaggaagtg |
27688928 |
T |
|
| Q |
221 |
tgtcatacttccaaaacacatgtaaacaactgagttgatattttttgtgtcaagccactttagacactcgtgtttgtcaatagatgcttc |
310 |
Q |
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| T |
27688929 |
tgtcatacttccaaaacacatgtaaacaactgagttgatattttttgtgtcaagccactttagacactcgtgtttgtcaatagatgcttc |
27689018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 59 - 295
Target Start/End: Complemental strand, 18989501 - 18989268
Alignment:
| Q |
59 |
ccaacctcttataattagtccttttccttccgttctttcctcgaatccttcaggtagccattcatctccatcttctttctgtgtcctcacaacccaaata |
158 |
Q |
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| T |
18989501 |
ccaacctcttataattagtccttttcctttcattattttctcaaattct---ggtagacctttttctctatcttctctctttttcttcaccaccaaaact |
18989405 |
T |
|
| Q |
159 |
aaattatgccctgatgcttcgagtcccatagcaatttccttaagctgagagttaaggaagtgtgtcatacttccaaaacacatgtaaacaactgagttga |
258 |
Q |
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| T |
18989404 |
aaatctttccacgatgctttgagtcccatagaaatttctttaagctgagagttaaggaagtgatttgtacttccaaagcacacataaacaactaagttga |
18989305 |
T |
|
| Q |
259 |
tattttttgtgtcaagccactttagacactcgtgttt |
295 |
Q |
| |
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||| |||||||||||||||||||||||||| |||||| |
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| T |
18989304 |
tatcttttgtgtcaagccactttagacacttgtgttt |
18989268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 295
Target Start/End: Complemental strand, 19001962 - 19001702
Alignment:
| Q |
32 |
atgttcaagaatcatcacttgtggagaccaacctcttataattagtccttttccttccgttctttcctcgaatccttcaggtagccattcatctccat-- |
129 |
Q |
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||||| |||||||| | ||| |||||||||||||||||||||||||| ||||||| | | |||| ||| ||| || ||||| | || |||| || |
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| T |
19001962 |
atgttgaagaatcaaaagttgaggagaccaacctcttataattagtccgtttcctttcatccttttctcaaattct---ggtagtcctttttctctatat |
19001866 |
T |
|
| Q |
130 |
cttctttctgtgtcctcacaacccaaataaaattatgccctgatgcttcgagtcccatagcaatttccttaagctgagagttaaggaagtgtgtcatact |
229 |
Q |
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| T |
19001865 |
cttctctctttttcttcaccacccaaacaaaatctttccccgatgctttgagtcccatatcaatttctttaatctgagagttaaggaagtgatttgtact |
19001766 |
T |
|
| Q |
230 |
tccaaaacacatgtaaacaactgagttgatattttttgtgtcaagccactttagacactcgtgttt |
295 |
Q |
| |
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|||||| ||| |||||||||||||||||| | ||||||||||||||||||||||||| ||||| |
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| T |
19001765 |
tccaaagaacacataaacaactgagttgata--tcttgtgtcaagccactttagacactcatgttt |
19001702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 33383089 - 33382860
Alignment:
| Q |
24 |
attgcttcatgttcaagaatcatcacttgtggagaccaacctcttataattagtccttttccttccgttctttcctcgaatccttcaggtagccattcat |
123 |
Q |
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|||||||| ||||||||||||| | ||| || ||||||||||||||||||||||| ||||||||| |||||| ||| |||||||| |||||||| || | |
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| T |
33383089 |
attgcttcgtgttcaagaatcaacgtttgcggcgaccaacctcttataattagtccctttccttccattcttttctcaaatccttctggtagccaatctt |
33382990 |
T |
|
| Q |
124 |
ctccatcttctttctgtgtcctcacaacccaaataaaattatgccctgatgcttcgagtcccatagcaatttccttaagctgagagttaaggaagtgtgt |
223 |
Q |
| |
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||||||||||||| | ||||||| |||||||||||| ||||| |||||||| |||||| |||||||||| |||||||||||||| | ||| | | |
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| T |
33382989 |
ctccatcttctttgcttctcctcaccacccaaataaaaaattgcccggatgcttcaagtcccgtagcaatttctttaagctgagagtttaagaaattcgc |
33382890 |
T |
|
| Q |
224 |
catacttccaaaacacatgtaaacaactga |
253 |
Q |
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| T |
33382889 |
catacttccaaagcatatataaacaactga |
33382860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 145 - 295
Target Start/End: Original strand, 33391086 - 33391236
Alignment:
| Q |
145 |
tcacaacccaaataaaattatgccctgatgcttcgagtcccatagcaatttccttaagctgagagttaaggaagtgtgtcatacttccaaaacacatgta |
244 |
Q |
| |
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|||| ||||||| ||||| | ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||| |||| || |
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| T |
33391086 |
tcaccacccaaacaaaatctttccccgatgcttcgagtcccatagcaatttctttaagctgagagttaaggaagtgatttttacttccaaagcacacata |
33391185 |
T |
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| Q |
245 |
aacaactgagttgatattttttgtgtcaagccactttagacactcgtgttt |
295 |
Q |
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| T |
33391186 |
aacaattgagttgatatcttttgtgtcaagccactttagacactcatgttt |
33391236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 33390968 - 33391037
Alignment:
| Q |
27 |
gcttcatgttcaagaatcatcacttgtggagaccaacctcttataattagtccttttccttccgttcttt |
96 |
Q |
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|||| ||||| |||||||| | ||| |||||||||||||||||||||||||| ||||||| | |||||| |
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| T |
33390968 |
gctttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccctttcctttcattcttt |
33391037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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