View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13999_low_25 (Length: 306)
Name: NF13999_low_25
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_low_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 3619238 - 3619519
Alignment:
| Q |
1 |
ggatattacatggtctgatgcttgatatcatatgttatggaaatactatttgtttcatgtaatatacttattgttttggtaagtttatttgtgtatcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3619238 |
ggatattacatggtctgatgcttgatatcatatgttatggaaatactatttgtttcatgtaatatacttattgttttggtaagtttatttgtatatcatc |
3619337 |
T |
|
| Q |
101 |
ttctacgtatcatatatatttatcagtaatgcatctaaaaacttaaatcacaagcaagcagacacggtgtttatatcaatctctgatacaaatattacat |
200 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3619338 |
ttttatgtatcatatatatttatcagtaatgcatctaaaaacttaaatcacaagcaagcagacacggtgtttatatcaatctctgatacaaatattgcat |
3619437 |
T |
|
| Q |
201 |
aaacccttatacataaagaaaaacaagc--atacctccacactgtaattacctacaacatcaatgtatagaacctagattaa |
280 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3619438 |
aaaccattatacataaagaaaaacaagcatatacctccacactgtaattacctacaacatcaatgtatagaatctagattaa |
3619519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University