View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_low_27 (Length: 296)
Name: NF13999_low_27
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 3361420 - 3361154
Alignment:
| Q |
18 |
gaaaactggcctgaaatttgttgtagtgctttgaccaaaagaatcgaccaacttgacgctgcagtcaccactttaaagagtgatcataccgattatgtag |
117 |
Q |
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| T |
3361420 |
gaaaactggcctgaaatttgttgtagtgctttgaccaaaagaatcgaccaacttgacgctgcggtcaccactttaaagagtgatcataccgattatgtag |
3361321 |
T |
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| Q |
118 |
cgatgcaggtcctattgcatagtaaacctgctgagacacttcatgaaataatgaaggctttacttgaagatcatcggcaagattctcatggcaaggtttg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3361320 |
cgatgcaggtcctattgcatagtaaacctgctgagacacttcatgaaataatgaaggctttacttgaagatcatcggcaagattcacatggcaaggtttg |
3361221 |
T |
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| Q |
218 |
gctttaattacatgaagttcagtgctttagatgatattgttgtttcttcttgcacacaaatattaatcttc |
288 |
Q |
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| T |
3361220 |
gct----ttacatgaagttcagtgctttagatgatattgttgtttcttcttgtacacaaatattaatcttc |
3361154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 35907517 - 35907360
Alignment:
| Q |
18 |
gaaaactggcctgaaatttgttgtagtgctttgaccaaaagaatcgaccaacttgacgctgcagtcaccactttaaagagtgatcataccgattatgtag |
117 |
Q |
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||||||||||||||||| || || | || |||||| ||| |||| |||| ||||| | ||| || | |||||| ||||||| |||| | ||| ||| || |
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| T |
35907517 |
gaaaactggcctgaaatatgctgcaatggtttgacagaaaaaatcaaccagcttgatgttgcggttaacactttgaagagtggtcatgctgatgatgcag |
35907418 |
T |
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| Q |
118 |
cgatgcaggtcctattgcatagtaaacctgctgagacacttcatgaaataatgaaggc |
175 |
Q |
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| T |
35907417 |
aggtgcagctactattggatagtggaccagctgagagacttcatgaaatagtgaaggc |
35907360 |
T |
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