View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_low_28 (Length: 287)
Name: NF13999_low_28
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 29917708 - 29917629
Alignment:
| Q |
73 |
taaaccaagtagcgatagcggtgttcaaagatcaaagtataagcataaactaatatagttgatacaacatatataaacat |
152 |
Q |
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| T |
29917708 |
taaaccaagtagcgatagcggtgttcaaagatcaaagtataagcataaactaatatagttgatacaacatatataaacat |
29917629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 272
Target Start/End: Complemental strand, 23994763 - 23994633
Alignment:
| Q |
141 |
atatataaacatcaaagcaattcaaaatccaagtcataaaaataattacaaagtagtggcttcttgctcaaagatcagatactcaggtccccacaaaata |
240 |
Q |
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| T |
23994763 |
atatataaacatcaaggtaattcaaggtccaaatcatgaaaataattacaaagaaatggcttcctgatcaaagatcaaatgcacaggtccccacaaaaca |
23994664 |
T |
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| Q |
241 |
acatccaagaaaatggcaaaatgcaaattact |
272 |
Q |
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| T |
23994663 |
a-atataagaaaatggcaaaatgaaaattact |
23994633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 19742880 - 19742783
Alignment:
| Q |
145 |
ataaacatcaaagcaattcaaaatccaagtcataaaaataattacaaagtagtggcttcttgctcaaagatcagatactcaggt-ccccacaaaataa |
241 |
Q |
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| T |
19742880 |
ataaacatcaaagtagttcaagatccaagtcataatattaactacaaagtagtggcttcttgctcaaagatcagatgcacaagtcccccacaaaataa |
19742783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 34039974 - 34040021
Alignment:
| Q |
161 |
ttcaaaatccaagtcataaaaataattacaaagtagtggcttcttgct |
208 |
Q |
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| T |
34039974 |
ttcaagatccaaatcataaaaataattacaaagaagtggcttcctgct |
34040021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 42028080 - 42028044
Alignment:
| Q |
167 |
atccaagtcataaaaataattacaaagtagtggcttc |
203 |
Q |
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| T |
42028080 |
atccaaatcataaaaataattacaaagaagtggcttc |
42028044 |
T |
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