View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_low_3 (Length: 727)
Name: NF13999_low_3
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 27 - 582
Target Start/End: Original strand, 2652397 - 2652953
Alignment:
| Q |
27 |
gtgtctgtgtaagacatgacatgtgtcagataccacaacatgccttcaattagaagtatttgtcaaaagagatcgagatttcattagactgacgaaatat |
126 |
Q |
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| T |
2652397 |
gtgtctgtgtaagacatgacatgtgttagataccggaacatgccttcaatcaaaagtgtttgtcaaaaaagatcaaaatttgactagactgacgaaatat |
2652496 |
T |
|
| Q |
127 |
tcacacattttgtatgcttgttgttctctaactacactccaaacttgtctaagaagaaaaggaattgtttgagaaaaaggggcttaaactcaagaatagc |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2652497 |
tcacacattttgtatgcttgttgttctctaactacactccaagcttgtctaagaagaaaaggaattgtttgagaaaaaggggcttaaactcaagaatagc |
2652596 |
T |
|
| Q |
227 |
ttaagcacaccaaccacccaagcaatgtacttgagaaagtgaccttgttaacaattaccatagcttagctgaatagtaacaccaaaacagtctcatgtat |
326 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2652597 |
ttaagcacaccaaccacccaagcgatgtacttgagaaagtgaccttgttaacaattaccatagcttagctgaatagtaacaccaaaacagtctcatgtat |
2652696 |
T |
|
| Q |
327 |
gatgaaaaactgtttggcttattcaagcaccgatgaaaaggctatcatttgctttccattagacaacacacattgcat-ccaagataaaaaatgtcaaaa |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2652697 |
gatgaaaaactgtttggcttattcaagcaccgatgaaaaggctatcatttgctttccattagacaacacacattgcatcccaagataaaaaatgtcaaaa |
2652796 |
T |
|
| Q |
426 |
tgctaccaattttttcaattaaataaaaaagtctcaatgtctgatgcacaaacatcacatcaaacaatcgctaagaacattaaatattaacaaagtcact |
525 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2652797 |
tgctaccaattttttcaattaaataaaaaagtctcaatgtctgatgcacaaacatcacatcaaacaatcgctaagaacattaaatattaacaaagtcact |
2652896 |
T |
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| Q |
526 |
aattaattccttcaaaatagaactacaaaggaacgattaaacataaaatttgttcat |
582 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
2652897 |
aattaattccttcaaagtagaactacaaaggaacaattaaacataaaatttgttcat |
2652953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 613 - 719
Target Start/End: Original strand, 2652984 - 2653090
Alignment:
| Q |
613 |
tacattcacatttctcattagactcaaaagaaactcacctacaattccatttgagaagtccactacccagttagttagcatctaactcactcattcactt |
712 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2652984 |
tacattcacatttctcattagactcaaaagaaactcacctacaattccatttgagaagtccactacccagttagttagcatctaactcactcattcactt |
2653083 |
T |
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| Q |
713 |
gatgatg |
719 |
Q |
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||||||| |
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| T |
2653084 |
gatgatg |
2653090 |
T |
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