View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_low_32 (Length: 267)
Name: NF13999_low_32
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 4842645 - 4842890
Alignment:
| Q |
1 |
gatgtgagattgctagtgaaggatggaaaatttccaccgaacagattatggctaaggtcaagaattttgaggtttgttaagttacttaaacactcaggaa |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4842645 |
gatgtgagattggtagtgaaggatggaaaatttccaccgaacagattatggctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaa |
4842744 |
T |
|
| Q |
101 |
gtttagcaccaaacatgttatagctgatatccagttctaccaaatcctttaaattgcatagtcctgtcataattaactatgtcctgtcatctttcaaaaa |
200 |
Q |
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||||||| ||||||||||| | |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4842745 |
gtttagccccaaacatgtttttgctgatatccagttcttccaaatccttcaaattgcatagtcctgtcataattaactatgtccggtcatctttcaaaaa |
4842844 |
T |
|
| Q |
201 |
attgacattatcataaaaatcttaaagtttttccaatggactcaat |
246 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4842845 |
attaacattatcataaaaatcttaaagtttttccaatggactcaat |
4842890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 5172880 - 5172635
Alignment:
| Q |
1 |
gatgtgagattgctagtgaaggatggaaaatttccaccgaacagattatggctaaggtcaagaattttgaggtttgttaagttacttaaacactcaggaa |
100 |
Q |
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||||||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5172880 |
gatgtgagattactaatgaaggatggaaaatttccactgaatagattatggctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaa |
5172781 |
T |
|
| Q |
101 |
gtttagcaccaaacatgttatagctgatatccagttctaccaaatcctttaaattgcatagtcctgtcataattaactatgtcctgtcatctttcaaaaa |
200 |
Q |
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| T |
5172780 |
gtttagccccaaacatgtttttgctgatatccagttctaccaaatccttcaaattgcatagtcctgtcataattaactatgtccagttatctttacaaaa |
5172681 |
T |
|
| Q |
201 |
attgacattatcataaaaatcttaaagtttttccaatggactcaat |
246 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5172680 |
attgacattatcataaaaatcttaaagtttttccaatggactcaat |
5172635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5195606 - 5195367
Alignment:
| Q |
1 |
gatgtgagattgctagtgaaggatggaaaatttccaccgaacagattatggctaaggtcaagaattttgaggtttgttaagttacttaaacactcaggaa |
100 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||| ||||||| | |||||||||||||||| |||||||| || |||| |
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| T |
5195606 |
gatgtgagattgctaatgaaagatggaaaatttccactgaacagattattactaagttcaagaactctgaggtttgttaagttgcttaaacaatctggaa |
5195507 |
T |
|
| Q |
101 |
gtttagcaccaaacatgttatagctgatatccagttctaccaaatcctttaaattgcatagtcctgtcataattaactatgtcctgtcatctttcaaaaa |
200 |
Q |
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|
||||||||| ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5195506 |
gtttagcactaaacatgtttttgctgatatccagttctaccaaatccttaaaattgcatagtcctgtcataattaactatgtcctgtcatctttacaaaa |
5195407 |
T |
|
| Q |
201 |
attgacattatcataaaaatctt-aaagtttttccaatgg |
239 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
5195406 |
attgacattatcataaaaatcttaaaagtttttccaatgg |
5195367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5159964 - 5159722
Alignment:
| Q |
1 |
gatgtgagattgctagtgaaggatggaaaatttccaccgaacagattatggctaaggtcaagaattttgaggtttgttaagttacttaaacactcaggaa |
100 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||||| ||||||||||| ||||| ||||||| | |||||||||||||||| |||||||||||||||| |
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| T |
5159964 |
gatgtgagattgctaatgaaagatggaaactttccactgaacagattattactaagttcaagaactctgaggtttgttaagttgcttaaacactcaggaa |
5159865 |
T |
|
| Q |
101 |
gtttagcaccaaacatgttatagctgatatccagttctaccaaatcctttaaattgcatagtcctgtcataa----ttaactatgtcctgtcatctttca |
196 |
Q |
| |
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|||||||| ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5159864 |
atttagcactaaacatgttctggctgatatccagttctaccaaatccttcaaattgcatagtcctgtcataattaattaactatgtcctgtcatctttac |
5159765 |
T |
|
| Q |
197 |
aaaaattgacattatcataaaaatcttaaagtttttccaatgg |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159764 |
aaaaattgacattatcataaaaatcttaaagtttttccaatgg |
5159722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5182212 - 5181969
Alignment:
| Q |
1 |
gatgtgagattgctagtgaaggatggaaaatttccaccgaacagattatggctaaggtcaagaattttgaggtttgttaagttacttaaacactcaggaa |
100 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||| ||||||| | | |||||||||||||| ||||||||||| |||| |
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| T |
5182212 |
gatgtgagattgctaatgaaagatggaaaatttccactgaacagattattactaagttcaagaactctaaggtttgttaagttgcttaaacactctggaa |
5182113 |
T |
|
| Q |
101 |
gtttagcaccaaacatgttatagctgatatccagttctaccaaatcctttaaattgcatagtcctgtcataa----ttaactatgtcctgtcatctttca |
196 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
5182112 |
gtttagcactaaacatgttatagctgatatccaattctaccaaatccttcaaattgcatagtcctgtcataattaattaactatgtcctgtcatctatac |
5182013 |
T |
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| Q |
197 |
aaaaattgacattatcataaaaatctt-aaagtttttccaatgg |
239 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5182012 |
aaaaattgacattatcataaaaatcttaaaagtttttccaatgg |
5181969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 5213772 - 5213602
Alignment:
| Q |
1 |
gatgtgagattgctagtgaaggatggaaaatttccaccgaacagattatggctaaggtcaagaattttgaggtttgttaagttacttaaacactcaggaa |
100 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| ||||| ||||| |||||| ||||||| || |||||||||||||| ||||||||||| |||| |
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| T |
5213772 |
gatgtgagattactaatgaaggatggaaaatttccactgaacaaattatagctaagttcaagaacattcaggtttgttaagttgcttaaacactcgggaa |
5213673 |
T |
|
| Q |
101 |
gtttagcaccaaacatgttatagctgatatccagttctaccaaatcctttaaattgcatagtcctgtcata |
171 |
Q |
| |
|
||| || | ||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||| |
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|
| T |
5213672 |
gttgcgcgctaaacatgttatagctgatatctagctctaccaaatccttcaatttgcatagtcctgtcata |
5213602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 4857118 - 4857151
Alignment:
| Q |
1 |
gatgtgagattgctagtgaaggatggaaaatttc |
34 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
4857118 |
gatgtgagattggtagtgaaggatggaaaatttc |
4857151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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