View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13999_low_35 (Length: 252)

Name: NF13999_low_35
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13999_low_35
NF13999_low_35
[»] chr1 (5 HSPs)
chr1 (10-236)||(4411196-4411425)
chr1 (63-134)||(4327574-4327645)
chr1 (58-150)||(48635169-48635260)
chr1 (77-152)||(42423183-42423258)
chr1 (100-158)||(441649-441707)
[»] chr8 (3 HSPs)
chr8 (77-145)||(35775218-35775286)
chr8 (61-152)||(8252812-8252903)
chr8 (77-149)||(7624591-7624663)
[»] chr2 (6 HSPs)
chr2 (49-158)||(4908798-4908907)
chr2 (58-152)||(4119404-4119498)
chr2 (58-152)||(11510968-11511061)
chr2 (98-156)||(6989789-6989847)
chr2 (45-135)||(28206708-28206798)
chr2 (111-152)||(6767689-6767730)
[»] chr4 (5 HSPs)
chr4 (108-152)||(51093272-51093316)
chr4 (99-150)||(19067434-19067485)
chr4 (83-149)||(22887822-22887888)
chr4 (83-149)||(22939486-22939552)
chr4 (58-152)||(41058935-41059029)
[»] chr7 (1 HSPs)
chr7 (58-152)||(21435975-21436070)
[»] chr3 (9 HSPs)
chr3 (59-150)||(35951047-35951138)
chr3 (61-136)||(40339257-40339331)
chr3 (60-158)||(30958044-30958142)
chr3 (60-158)||(30973856-30973954)
chr3 (58-148)||(51667153-51667243)
chr3 (100-140)||(42534464-42534504)
chr3 (80-127)||(44375518-44375564)
chr3 (109-150)||(23187691-23187732)
chr3 (100-152)||(4194008-4194060)
[»] chr6 (3 HSPs)
chr6 (61-129)||(26492568-26492636)
chr6 (45-136)||(25208656-25208747)
chr6 (107-140)||(7263099-7263132)
[»] chr5 (3 HSPs)
chr5 (98-152)||(10859855-10859909)
chr5 (100-152)||(10860373-10860425)
chr5 (108-152)||(18977376-18977420)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 4411425 - 4411196
Alignment:
Q  10 acaaaacttaattttgattttcttcctaagagggtgttgcatgtaatttgattt-atgtttcgatagattc--atgtaaaagttgattgagcaataaatt 106  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||    
T  4411425 acaaaaattaattttgattttctgcctaagagggtgttgcatgtaatttgattttatgtttcgatagattctcatgtaaaagttgattgagcaataaatt 4411326  T
Q  107 caaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaagtaccaactctactagaaaacatccaaagatgtcaaaatccgttctacac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411325 caaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaagtaccaactctactagaaaacatccaaagatgtcaaaatccgttctacac 4411226  T
Q  207 atcagaaatcaattttttccatgttcaaga 236  Q
    ||||||||||||||||||||||||||||||    
T  4411225 atcagaaatcaattttttccatgttcaaga 4411196  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 4327574 - 4327645
Alignment:
Q  63 tatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaa 134  Q
    |||||||  ||| |||||||||| ||| | |||| |||||||||||||| ||||||||||||||||||||||    
T  4327574 tatgtttgaatatattcatgtaatagtggcttgaacaataaattcaaggataaaaatcaattgtagaggcaa 4327645  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 48635169 - 48635260
Alignment:
Q  58 tgatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctag 150  Q
    |||||||||||| |||| ||||||||||| || | || | | |||||||||| | |||||||||||| ||||| ||||||||  |||||||||    
T  48635169 tgatttatgtttggatacattcatgtaaa-gtgggtttaacgataaattcaatggtaaaaatcaattatagagacaaaagcttcaaattctag 48635260  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 42423183 - 42423258
Alignment:
Q  77 ttcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 152  Q
    |||| |||||||| | |||| |||||||||  | ||||||| |||||| ||||| ||||||||| |||||||||||    
T  42423183 ttcacgtaaaagtgggttgaccaataaatttgaagctaaaattcaattttagagacaaaagctctaaattctagct 42423258  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 441649 - 441707
Alignment:
Q  100 ataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaagt 158  Q
    ||||||||||| |||||||||||||||||| || ||| ||  ||||||||||| |||||    
T  441649 ataaattcaagtctaaaaatcaattgtagaagccaaaactataaattctagctttaagt 441707  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 35775286 - 35775218
Alignment:
Q  77 ttcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaat 145  Q
    ||||||||||||| |||||| |||| |||||||||||||||||||||||||||| ||||||||| ||||    
T  35775286 ttcatgtaaaagtggattgaacaatgaattcaaggctaaaaatcaattgtagagacaaaagctccaaat 35775218  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 152
Target Start/End: Complemental strand, 8252903 - 8252812
Alignment:
Q  61 tttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 152  Q
    ||||||||| |||| || ||||||||||| | |||| || |||||||||||| ||| ||||| || ||||||||| |||| ||||| |||||    
T  8252903 tttatgtttagatacatgcatgtaaaagtgggttgaacagtaaattcaaggcaaaacatcaaatgaagaggcaaacgctccaaattgtagct 8252812  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 7624591 - 7624663
Alignment:
Q  77 ttcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattcta 149  Q
    |||| ||||||||  ||||| |||||| |||||||| |||| |||||||||||| ||||||||| || |||||    
T  7624591 ttcaagtaaaagtaaattgaacaataatttcaaggccaaaagtcaattgtagagccaaaagctccaacttcta 7624663  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 4908907 - 4908798
Alignment:
Q  49 catgtaatttgatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattct 148  Q
    |||||||  |||||||||||| |||| |||||||| ||||| |||||| ||||||| | |||||| ||||||||||||||| || ||| ||  ||||| |    
T  4908907 catgtaaagtgatttatgtttggatacattcatgttaaagtggattgaacaataaagttaaggctgaaaatcaattgtagaagccaaatctacaaatttt 4908808  T
Q  149 agctctaagt 158  Q
    |||| |||||    
T  4908807 agctttaagt 4908798  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 4119404 - 4119498
Alignment:
Q  58 tgatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 152  Q
    ||||||||||||  ||| ||||||||||  ||  ||||| ||||| ||||| |||||||| |||||| ||| ||||||||||  |||||||||||    
T  4119404 tgatttatgtttgaatacattcatgtaagcgtgaattgatcaatacattcatggctaaaagtcaattatagcggcaaaagcttcaaattctagct 4119498  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 11511061 - 11510968
Alignment:
Q  58 tgatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 152  Q
    |||||||||||| | || |||||| ||||||| | |||| |||||||||  ||| ||||| | |||||||||||||||| ||| |||||||||||    
T  11511061 tgatttatgtttagctacattcatataaaagtgggttgaacaataaatttgaggttaaaa-taaattgtagaggcaaaaactccaaattctagct 11510968  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 6989789 - 6989847
Alignment:
Q  98 caataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaa 156  Q
    |||||||||||||  | |||||||||||||||| ||||| | | |||||||||||||||    
T  6989789 caataaattcaagattgaaaatcaattgtagagtcaaaaacactaaattctagctctaa 6989847  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 28206798 - 28206708
Alignment:
Q  45 gttgcatgtaatttgatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaa 135  Q
    |||| |||||| || |||||||||| | || |||||||||||||||  ||||  ||||||||  || |||||||||||| ||| |||||||    
T  28206798 gttgaatgtaaattaatttatgtttaggtacattcatgtaaaagtttgttgaataataaatttgagactaaaaatcaatggtataggcaaa 28206708  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 6767730 - 6767689
Alignment:
Q  111 gctaaaaatcaattgtagaggcaaaagctcaaaattctagct 152  Q
    ||||||| ||||||||||| |||||||||| |||||||||||    
T  6767730 gctaaaattcaattgtagaagcaaaagctccaaattctagct 6767689  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 51093316 - 51093272
Alignment:
Q  108 aaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 152  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  51093316 aaggctaaaaatcaattgtagaggcaaaagctccaaattctagct 51093272  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 19067485 - 19067434
Alignment:
Q  99 aataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctag 150  Q
    ||||||||| ||||||| |||||||||||||| ||||||||  |||||||||    
T  19067485 aataaattcgaggctaataatcaattgtagagacaaaagcttcaaattctag 19067434  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 22887822 - 22887888
Alignment:
Q  83 taaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattcta 149  Q
    ||||||||  |||| |||||||||||||  |||||| ||||| |||||| |||||||| ||||||||    
T  22887822 taaaagttatttgaacaataaattcaagagtaaaaaccaattttagagggaaaagctctaaattcta 22887888  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 22939486 - 22939552
Alignment:
Q  83 taaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattcta 149  Q
    ||||||||  |||| |||||||||||||  |||||| ||||| |||||| |||||||| ||||||||    
T  22939486 taaaagttatttgaacaataaattcaagagtaaaaaccaattttagagggaaaagctctaaattcta 22939552  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 41059029 - 41058935
Alignment:
Q  58 tgatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 152  Q
    |||||||||||  |||| ||| || ||||||| | |||| |||| |||| || | ||||| |||||||||||||||||| ||| ||||| |||||    
T  41059029 tgatttatgttcagatacatttatataaaagtgggttgaacaatcaatttaaagttaaaagtcaattgtagaggcaaaaactcgaaattttagct 41058935  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 21435975 - 21436070
Alignment:
Q  58 tgatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagct-caaaattctagct 152  Q
    |||||||||||| |||   |||||| |||||| |||||| |||||| |||||  |||||| ||||| ||||||||||||||| |||||||||||||    
T  21435975 tgatttatgtttggatgccttcatggaaaagtggattgaacaataacttcaaacctaaaattcaatggtagaggcaaaagctccaaaattctagct 21436070  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 35951138 - 35951047
Alignment:
Q  59 gatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctag 150  Q
    ||||||||||| |||| |||| | ||| ||| | |||| ||| |||||||| || |||| |||||||||| ||||||||| |||||||||||    
T  35951138 gatttatgtttagatacattcgtataatagtggcttgaacaaaaaattcaatgccaaaactcaattgtaggggcaaaagcgcaaaattctag 35951047  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 40339331 - 40339257
Alignment:
Q  61 tttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaa 136  Q
    ||||||||| |||| ||| | ||||||||  ||||| |||||||||||||||| ||||||||||||||| ||||||    
T  40339331 tttatgtttggatatatttaggtaaaagtgaattgaacaataaattcaaggct-aaaatcaattgtagaagcaaaa 40339257  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 30958142 - 30958044
Alignment:
Q  60 atttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaagt 158  Q
    |||||||||| |||| ||||||||||||||  ||||| |||||| || |||| ||||| ||| |||||||  ||||||||| |||| | |||| |||||    
T  30958142 atttatgtttggatatattcatgtaaaagtgaattgaacaataatttaaaggttaaaagtcacttgtagaaacaaaagctctaaatcccagctttaagt 30958044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 30973954 - 30973856
Alignment:
Q  60 atttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaagt 158  Q
    |||||||||| |||| ||||||||||||||  ||||| |||||| || |||| ||||| ||| |||||||  ||||||||| |||| | |||| |||||    
T  30973954 atttatgtttggatatattcatgtaaaagtgaattgaacaataatttaaaggttaaaagtcacttgtagaaacaaaagctctaaatcccagctttaagt 30973856  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 51667243 - 51667153
Alignment:
Q  58 tgatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattct 148  Q
    |||||||||||| | |||||||||||||||||   |||| |||||||||||||||| || ||||||  |||  |||||| ||| |||||||    
T  51667243 tgatttatgtttgggtagattcatgtaaaagtgcgttgaacaataaattcaaggctgaatatcaatcatagttgcaaaaactccaaattct 51667153  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 42534504 - 42534464
Alignment:
Q  100 ataaattcaaggctaaaaatcaattgtagaggcaaaagctc 140  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  42534504 ataaatttaaggctaaaaaacaattgtagaggcaaaagctc 42534464  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 44375518 - 44375564
Alignment:
Q  80 atgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgta 127  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  44375518 atgtaaaagt-gattgaacaataaatttaaggctaaaaatcaattgta 44375564  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 23187732 - 23187691
Alignment:
Q  109 aggctaaaaatcaattgtagaggcaaaagctcaaaattctag 150  Q
    ||||||||||||||||||||||| |||| || ||||||||||    
T  23187732 aggctaaaaatcaattgtagaggtaaaaccttaaaattctag 23187691  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 4194008 - 4194060
Alignment:
Q  100 ataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 152  Q
    |||||||  |||||||||||||||||||||||||||  ||  |||||||||||    
T  4194008 ataaattagaggctaaaaatcaattgtagaggcaaacacttcaaattctagct 4194060  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 26492636 - 26492568
Alignment:
Q  61 tttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtaga 129  Q
    ||||||||| |||| ||| ||||| | || |||||| ||||| |||| |||||||||||||||||||||    
T  26492636 tttatgtttggatatatttatgtatacgtggattgaacaatatattcgaggctaaaaatcaattgtaga 26492568  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 25208747 - 25208656
Alignment:
Q  45 gttgcatgtaatttgatttatgtttcgatagattcatgtaaaagttgattgagcaataaattcaaggctaaaaatcaattgtagaggcaaaa 136  Q
    |||| ||||||  ||||||||||||||||||||| |||||||||| |||| |   ||| |||| || |||| |||||| ||||||| |||||    
T  25208747 gttgaatgtaaaatgatttatgtttcgatagatttatgtaaaagtggattaaatgatatattcgagtctaataatcaactgtagagacaaaa 25208656  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 140
Target Start/End: Complemental strand, 7263132 - 7263099
Alignment:
Q  107 caaggctaaaaatcaattgtagaggcaaaagctc 140  Q
    ||||||||||||||||||||||| ||||||||||    
T  7263132 caaggctaaaaatcaattgtagaagcaaaagctc 7263099  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 10859855 - 10859909
Alignment:
Q  98 caataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 152  Q
    |||||||||  ||| |||||||||| ||| ||||||||||||| |||||||||||    
T  10859855 caataaatttgaggttaaaaatcaaatgttgaggcaaaagctccaaattctagct 10859909  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 10860373 - 10860425
Alignment:
Q  100 ataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 152  Q
    |||||| ||| |||||||||||| | ||||||||||||||  |||||||||||    
T  10860373 ataaatccaaagctaaaaatcaactctagaggcaaaagctacaaattctagct 10860425  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 18977376 - 18977420
Alignment:
Q  108 aaggctaaaaatcaattgtagaggcaaaagctcaaaattctagct 152  Q
    ||||||||||||||||||||||  ||||| ||| |||||||||||    
T  18977376 aaggctaaaaatcaattgtagaaacaaaaactctaaattctagct 18977420  T

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