View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_low_36 (Length: 250)
Name: NF13999_low_36
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 387257 - 387029
Alignment:
| Q |
4 |
agggtcacacagtaagtgacaactagttagatactaaataaataaataaaagtagtcttcattttcgtctggttatttttnnnnnnnnnnnnnnnnnnnn |
103 |
Q |
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| T |
387257 |
agggtcacacagtaagtgacaactagttagatactaaataaataaataaaagtagtcttcattttcgtctggttatttttagagacagagatagagagag |
387158 |
T |
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| Q |
104 |
nncttcacccgcaatatttggatccaaatcagcttcatctgcagaagctgctgcacatgaaactcttggaaatcggaataaaccatcaacgtcaagtaat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
387157 |
--cttcacccgcaatatttggatccaaatcagcttcatctgcagaagctgctgcacatgaaactcttggaaatcggaataaaccatcaacgtcaagtaat |
387060 |
T |
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| Q |
204 |
tcatgtttgccgacattaggtagagagaaac |
234 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
387059 |
tcatgtttgccgacattaggtagagagaaac |
387029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 47847331 - 47847398
Alignment:
| Q |
108 |
tcacccgcaatatttggatccaaatcagcttcatctgcagaagctgctgcacatgaaactcttggaaa |
175 |
Q |
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| T |
47847331 |
tcaccggcaatactaggatcaagatcagcatcatctgcagaagctgctgcacatgaaactcttggaaa |
47847398 |
T |
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