View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_low_37 (Length: 245)
Name: NF13999_low_37
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 14596838 - 14597051
Alignment:
| Q |
14 |
cagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacaga |
113 |
Q |
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| T |
14596838 |
cagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgcagatccacgaaatgcatctcgcttggttacacaatatacaga |
14596937 |
T |
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| Q |
114 |
acgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14596938 |
acgccatccacgattgtgcatgcggtaccctgtaaccacatcctctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttca |
14597037 |
T |
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| Q |
214 |
tacctacatgaaat |
227 |
Q |
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|||||||||||||| |
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| T |
14597038 |
tacctacatgaaat |
14597051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 14611732 - 14611523
Alignment:
| Q |
14 |
cagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacaga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||| |
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| T |
14611732 |
cagaacctgtggcccatcttagcacctggtgtagtcgatcagtaaggttaattggtgctgatccgcgaaatgcatctcgcttggtcacgcaatatacaga |
14611633 |
T |
|
| Q |
114 |
acgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttca |
213 |
Q |
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| T |
14611632 |
acgccatccacggttgtgcatgcggtaacctgtaacgacgtcctctgtcactgatccataaatccatcccactctgtctccccattctgtcttctcttcg |
14611533 |
T |
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| Q |
214 |
tacctacatg |
223 |
Q |
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|||||||||| |
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| T |
14611532 |
tacctacatg |
14611523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 15417057 - 15417259
Alignment:
| Q |
16 |
gaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacagaac |
115 |
Q |
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|||||||| ||||||||||| || ||||||| ||||| || ||||| || ||||||| |||||| || || |||| || || | ||||||| || | |
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| T |
15417057 |
gaacctgttgcccatcttagaacttggtgtaaacgatcggtgagatttataggtgctgttccacggaaagcgtctctttttgtgatgcaatatatcgatc |
15417156 |
T |
|
| Q |
116 |
gccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcata |
215 |
Q |
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| T |
15417157 |
tccatccacggttgtgcattctgtaaccagttacaacatcttctgtcactgatccataaatccaacctattctatctccccattctgttttatcctcata |
15417256 |
T |
|
| Q |
216 |
cct |
218 |
Q |
| |
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||| |
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|
| T |
15417257 |
cct |
15417259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 217
Target Start/End: Original strand, 12192718 - 12192859
Alignment:
| Q |
76 |
ccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaa |
175 |
Q |
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||||| || ||||| | |||||| |||||||| ||||| | |||||| | ||||||||| | || ||||| || || || || || || ||||| |||| |
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| T |
12192718 |
ccacggaaggcatccctcttggtcacacaatacacagacctccatcctctattgtgcattctataacctgtcacaacatcctcggttaccgacccgtaaa |
12192817 |
T |
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| Q |
176 |
tccatcccactctttctccccattctgtcttgtcttcatacc |
217 |
Q |
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||||||| ||||| ||||||||||| ||||| |||||||||| |
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| T |
12192818 |
tccatccaactctatctccccattcggtcttatcttcatacc |
12192859 |
T |
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