View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_low_41 (Length: 220)
Name: NF13999_low_41
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 23121454 - 23121269
Alignment:
| Q |
17 |
attgggagagtgaaaggggaatagcacatgcttgccttctaagttcnnnnnnnnnnnaagaagctataattgcttaacttctaagttaatgtcagagtgt |
116 |
Q |
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| T |
23121454 |
attgggagagtgaaagaggaatagcacatgcttaccctctaaggt-ttttttattttaagaagctataattggttaacttctaagttaatgtaagagtgt |
23121356 |
T |
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| Q |
117 |
aacagaactggtttctctatgattagcgctttttctatggggaaaaaagagaggggatgtcaaccattcgtgaggaaaataattgta |
203 |
Q |
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| T |
23121355 |
aacacaactggtttctctatgattagtgctttttctatgggaaaaaaagagaggggatgttaaccattcgtgaggaaaataattgta |
23121269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 22631139 - 22631256
Alignment:
| Q |
86 |
ttgcttaacttctaagttaatgtcagagtgtaacagaactggtttctctatgattagcgctttttctatggggaaaaaagagaggggatgtcaaccattc |
185 |
Q |
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| T |
22631139 |
ttgcttaacttctaagttaatgtcagagtgtaaaataactggtttctctatgattagcgctttttctatgggaaaaaaagagaggggatgtcaaccattc |
22631238 |
T |
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| Q |
186 |
gtgaggaaaataattgta |
203 |
Q |
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| T |
22631239 |
atgaggaaaataattgta |
22631256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 27366351 - 27366462
Alignment:
| Q |
88 |
gcttaacttctaagttaatgtcagagtgtaacagaactggtttctctatgattagcgctttttctatggggaaaaaagagaggggatgtcaaccattcgt |
187 |
Q |
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| T |
27366351 |
gcttaacttcgaagttaatgtcaaggtgtaacaaaattggtttctctatgattagcatttttacttagagaaaaaaagacaggggatgtcaaccattcat |
27366450 |
T |
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| Q |
188 |
gaggaaaataat |
199 |
Q |
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||||||| |||| |
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| T |
27366451 |
gaggaaagtaat |
27366462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 27456698 - 27456809
Alignment:
| Q |
88 |
gcttaacttctaagttaatgtcagagtgtaacagaactggtttctctatgattagcgctttttctatggggaaaaaagagaggggatgtcaaccattcgt |
187 |
Q |
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| T |
27456698 |
gcttaacttcgaagttaatgtcaaggtgtaacaaaattggtttctctatgattagcatttttacttagagaaaaaaagacaggggatgtcaaccattcat |
27456797 |
T |
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| Q |
188 |
gaggaaaataat |
199 |
Q |
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||||||| |||| |
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| T |
27456798 |
gaggaaagtaat |
27456809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 194
Target Start/End: Original strand, 51093886 - 51093921
Alignment:
| Q |
159 |
aaaaaagagaggggatgtcaaccattcgtgaggaaa |
194 |
Q |
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| T |
51093886 |
aaaaaagagaggggatgtcaaccattcatgaggaaa |
51093921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 45074622 - 45074578
Alignment:
| Q |
159 |
aaaaaagagaggggatgtcaaccattcgtgaggaaaataattgta |
203 |
Q |
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|||||| | |||||||||||||||||| |||||||| |||||||| |
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| T |
45074622 |
aaaaaaaaaaggggatgtcaaccattcatgaggaaagtaattgta |
45074578 |
T |
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