View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13999_low_43 (Length: 218)

Name: NF13999_low_43
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13999_low_43
NF13999_low_43
[»] chr7 (17 HSPs)
chr7 (15-200)||(26204169-26204354)
chr7 (15-200)||(26223807-26223992)
chr7 (115-200)||(26191540-26191625)
chr7 (110-200)||(26088057-26088147)
chr7 (110-200)||(26111845-26111935)
chr7 (94-200)||(26155478-26155584)
chr7 (115-201)||(26242671-26242757)
chr7 (115-200)||(19103334-19103419)
chr7 (103-200)||(26179358-26179455)
chr7 (94-201)||(26297719-26297826)
chr7 (94-200)||(26128842-26128948)
chr7 (118-200)||(26302077-26302159)
chr7 (118-201)||(26251119-26251202)
chr7 (16-82)||(26302211-26302277)
chr7 (117-200)||(26186517-26186600)
chr7 (106-155)||(26227316-26227365)
chr7 (16-57)||(26297875-26297916)
[»] chr4 (1 HSPs)
chr4 (117-200)||(44903525-44903608)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 26204354 - 26204169
Alignment:
Q  15 cacagactcattttccttagaattaagccaatttaccaattcttgatcttttccaatgttcttttccgtgtatcctttatcatcgtctttgttaatccat 114  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26204354 cacagactcgttttccttagaattaagccaatttaccaattcttgatcttttccaatgttcttttccgtgtatcctttatcatcgtctttgttaatccat 26204255  T
Q  115 gctgaaactggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcattaaaact 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26204254 gctgaaaccggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcatgaaaact 26204169  T

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Target: chr7; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 26223992 - 26223807
Alignment:
Q  15 cacagactcattttccttagaattaagccaatttaccaattcttgatcttttccaatgttcttttccgtgtatcctttatcatcgtctttgttaatccat 114  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26223992 cacagactcgttttccttagaattaagccaatttaccaattcttgatcttttccaatgttcttttctgtgtatcctttatcatcgtctttgttaatccat 26223893  T
Q  115 gctgaaactggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcattaaaact 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26223892 gctgaaaccggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcatgaaaact 26223807  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 26191625 - 26191540
Alignment:
Q  115 gctgaaactggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcattaaaact 200  Q
    |||||||||||||||| ||||||||||||||||||  ||||||| |||| |||||||||||| |||||||||||||||| ||||||    
T  26191625 gctgaaactggtcctacactccaagatttgatcccccttgtagtattacaaagtttctcatattcactttctagttcatgaaaact 26191540  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 26088147 - 26088057
Alignment:
Q  110 tccatgctgaaactggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcattaaaact 200  Q
    |||| ||||||||||| |||| |||||||||||||||||| ||||||||  | |||||||| |||||||||||||| ||||||| ||||||    
T  26088147 tccaagctgaaactggccctacactccaagatttgatccccattgtagtgcttccaagtttttcataatcactttccagttcatgaaaact 26088057  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 26111935 - 26111845
Alignment:
Q  110 tccatgctgaaactggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcattaaaact 200  Q
    |||| ||||||||||| |||| |||||||||||||||||| ||||||||  | |||||||| |||||||||||||| ||||||| ||||||    
T  26111935 tccaagctgaaactggccctacactccaagatttgatccccattgtagtgcttccaagtttttcataatcactttccagttcatgaaaact 26111845  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 26155584 - 26155478
Alignment:
Q  94 tcatcgtctttgttaatccatgctgaaactggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcat 193  Q
    ||||| || ||||||  ||||| |||||||||||||| |||||||| ||||||||| || ||||| |||| |||||| |||||||||||||| |||||||    
T  26155584 tcatcatccttgttagcccatgatgaaactggtcctacactccaagttttgatccccatggtagtgttactaagtttttcataatcactttccagttcat 26155485  T
Q  194 taaaact 200  Q
     ||||||    
T  26155484 gaaaact 26155478  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 26242757 - 26242671
Alignment:
Q  115 gctgaaactggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcattaaaactg 201  Q
    |||||||||||||| | |||||| |||||||| || ||||||||||||| ||| ||||||||||||||||| ||||||| |||||||    
T  26242757 gctgaaactggtccgacactccatgatttgattccgattgtagttttactaagattctcataatcactttcaagttcatgaaaactg 26242671  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 19103334 - 19103419
Alignment:
Q  115 gctgaaactggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcattaaaact 200  Q
    |||||||||||||||| || ||||||||||||||| | |||||| |||||||||||  ||||||||||||| ||||||| ||||||    
T  19103334 gctgaaactggtcctacacaccaagatttgatccccaatgtagtcttaccaagttttacataatcactttccagttcatgaaaact 19103419  T

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Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 103 - 200
Target Start/End: Complemental strand, 26179455 - 26179358
Alignment:
Q  103 ttgttaatccatgctgaaactggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcattaaaact 200  Q
    |||||| |||| |||||||||||||||| |||||||| ||||||||| |||||||| ||||  | ||| |||||||||||||| ||||||| ||||||    
T  26179455 ttgttagtccaagctgaaactggtcctacactccaagttttgatccccattgtagtgttacttaatttttcataatcactttcaagttcatgaaaact 26179358  T

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Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 26297826 - 26297719
Alignment:
Q  94 tcatcgtctttgttaatccatgctgaaactggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcat 193  Q
    ||||| || ||||||  ||| |||||||||||||| | |||||| || ||||| || ||||||||||||  ||||||||||||||||||||| |||||||    
T  26297826 tcatcatccttgttagcccaggctgaaactggtccgacactccatgacttgattccgattgtagttttaaaaagtttctcataatcactttcaagttcat 26297727  T
Q  194 taaaactg 201  Q
     |||||||    
T  26297726 gaaaactg 26297719  T

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Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 26128948 - 26128842
Alignment:
Q  94 tcatcgtctttgttaatccatgctgaaactggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcat 193  Q
    ||||| || ||||||  ||||| |||||||||||||| |||||||||||||||||| |  ||||| |||| ||  || |||||||||||||| |||||||    
T  26128948 tcatcatccttgttagcccatgatgaaactggtcctacactccaagatttgatccccaaggtagtgttacaaatgttttcataatcactttccagttcat 26128849  T
Q  194 taaaact 200  Q
     ||||||    
T  26128848 gaaaact 26128842  T

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Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 26302159 - 26302077
Alignment:
Q  118 gaaactggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcattaaaact 200  Q
    ||||||||||||| | ||||||||||||| || ||||| |||| || ||||||| ||||||||||||| ||||||| ||||||    
T  26302159 gaaactggtcctacattccaagatttgattcccattgttgtttgactaagtttcacataatcactttcaagttcatgaaaact 26302077  T

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Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 26251202 - 26251119
Alignment:
Q  118 gaaactggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcattaaaactg 201  Q
    ||||||||||| | |||||| |||||||| || |||||| |||||| ||| ||||| |||||| |||| ||||||| |||||||    
T  26251202 gaaactggtccgacactccatgatttgattccaattgtacttttacaaagcttctcgtaatcattttcaagttcatgaaaactg 26251119  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 26302277 - 26302211
Alignment:
Q  16 acagactcattttccttagaattaagccaatttaccaattcttgatcttttccaatgttcttttccg 82  Q
    ||||||||||||| ||| || |||||||||||||||||||||   |||||||||| |||||| ||||    
T  26302277 acagactcattttgctttgagttaagccaatttaccaattctgtttcttttccaaagttcttctccg 26302211  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 26186600 - 26186517
Alignment:
Q  117 tgaaactggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcattaaaact 200  Q
    |||||||||||||| |||||| ||||||||||| |   |||| |||| |||||| | ||||||||| || ||||||| ||||||    
T  26186600 tgaaactggtcctacactccatgatttgatccccaagatagtgttactaagttttttataatcactctccagttcatgaaaact 26186517  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 26227365 - 26227316
Alignment:
Q  106 ttaatccatgctgaaactggtcctatactccaagatttgatccctattgt 155  Q
    |||| |||||||||||||||||||| |||||| | ||||||||| |||||    
T  26227365 ttaagccatgctgaaactggtcctacactccatgctttgatccccattgt 26227316  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 26297916 - 26297875
Alignment:
Q  16 acagactcattttccttagaattaagccaatttaccaattct 57  Q
    ||||| ||||||||||| |||||||||||||||| |||||||    
T  26297916 acagattcattttccttcgaattaagccaatttagcaattct 26297875  T

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Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 44903608 - 44903525
Alignment:
Q  117 tgaaactggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcattaaaact 200  Q
    |||||||||||||| ||||||||| || ||||| ||||||||||||| || |||||||||||||||||| ||||||| ||||||    
T  44903608 tgaaactggtcctacactccaagacttaatccccattgtagttttactaactttctcataatcactttcaagttcatgaaaact 44903525  T

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