View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13999_low_6 (Length: 551)

Name: NF13999_low_6
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13999_low_6
NF13999_low_6
[»] chr6 (6 HSPs)
chr6 (43-536)||(7712217-7712710)
chr6 (405-468)||(10890389-10890452)
chr6 (405-468)||(29246399-29246462)
chr6 (406-481)||(32693471-32693546)
chr6 (326-391)||(12117149-12117214)
chr6 (405-478)||(1913813-1913886)
[»] chr3 (7 HSPs)
chr3 (405-491)||(21143744-21143830)
chr3 (405-471)||(49809185-49809251)
chr3 (405-509)||(46560678-46560783)
chr3 (324-403)||(354427-354506)
chr3 (325-402)||(2301837-2301914)
chr3 (367-403)||(3758630-3758666)
chr3 (313-405)||(34183232-34183324)
[»] chr7 (6 HSPs)
chr7 (322-403)||(3182430-3182511)
chr7 (341-403)||(26866926-26866988)
chr7 (352-399)||(3606808-3606855)
chr7 (427-481)||(39259375-39259429)
chr7 (405-453)||(12877467-12877515)
chr7 (405-481)||(21091301-21091377)
[»] chr2 (6 HSPs)
chr2 (321-405)||(37494706-37494789)
chr2 (406-481)||(21454614-21454688)
chr2 (405-480)||(30942500-30942575)
chr2 (325-392)||(42960706-42960773)
chr2 (407-520)||(29929916-29930029)
chr2 (321-402)||(42467900-42467980)
[»] chr1 (4 HSPs)
chr1 (409-462)||(19808813-19808866)
chr1 (348-402)||(4364243-4364297)
chr1 (408-481)||(30066727-30066800)
chr1 (405-437)||(19809051-19809083)
[»] chr4 (3 HSPs)
chr4 (369-405)||(17843915-17843951)
chr4 (325-405)||(41194731-41194811)
chr4 (405-481)||(42813504-42813581)
[»] scaffold0024 (2 HSPs)
scaffold0024 (407-478)||(121324-121395)
scaffold0024 (407-437)||(114598-114628)
[»] chr8 (3 HSPs)
chr8 (406-481)||(29858438-29858512)
chr8 (326-402)||(11791990-11792066)
chr8 (321-397)||(29858339-29858415)


Alignment Details
Target: chr6 (Bit Score: 458; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 43 - 536
Target Start/End: Complemental strand, 7712710 - 7712217
Alignment:
Q  43 acagcgcccggaaaatcatgtcgcctgcctcgaaacagagattagaaacatcgataaaatttcatagaaaattaagatgtgctttcatgattagagacat 142  Q
    ||||| || ||||||| |||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7712710 acagcaccaggaaaataatgtggcctgcatcgaaaaagagattagaaacatcgataaaatttcatagaaaattaagatgtgctttcatgattagagacat 7712611  T
Q  143 aatcatactatcaaacctgatctcgtaatattttccatttggcagtccgtcttgtctcagatcatccataacagagaaataagtatggaagcatgcatct 242  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7712610 aaccatactatcaaacctgatctcgtaatattttccatttggcagtccgtcttgtctcagatcatccataacagagaaataagtatggaagcatgcatct 7712511  T
Q  243 cttacatccatcacaatatcaaaggtcttcaaaatggtgctccatgttccatcctgtggagccaatacgaaatcagacatgatattttgacacacgaatt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7712510 cttacatccatcacaatatcaaaggtcttcaaaatggtgctccacgttccatcctgtggagccaatacgaaatcagacatgatattttgacacacgaatt 7712411  T
Q  343 tgataacaaatttcgacaacagtttagatggttaacgtagttcaaatatgtggttaattacgtaatgaatataacaaggtgtcacaactcattaattatc 442  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7712410 tgataacaaatttcgacaacagtttagatggttaacatagttcaaatatgtggttaattacgtaatgaatataacaaggtgtcacaactcattaattatc 7712311  T
Q  443 tactgaacatatttaaccacgattttaaacgtcattaactaggattgtcggtgttcaaatatacataatgtccattaatcacgatccatgttag 536  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7712310 tactgaacatatttaaccacgattttaaacgtcattaactaggattgtcggtgttcaaatatacataatgtccattaatcacgatccatgttag 7712217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 468
Target Start/End: Complemental strand, 10890452 - 10890389
Alignment:
Q  405 taatgaatataacaaggtgtcacaactcattaattatctactgaacatatttaaccacgatttt 468  Q
    ||||||||||||||||||||||| |||||||||  ||| |||||||| | ||| ||||||||||    
T  10890452 taatgaatataacaaggtgtcacgactcattaaccatccactgaacacaattatccacgatttt 10890389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 468
Target Start/End: Complemental strand, 29246462 - 29246399
Alignment:
Q  405 taatgaatataacaaggtgtcacaactcattaattatctactgaacatatttaaccacgatttt 468  Q
    ||||||||||||||||||||| |||||||||||  ||  |||||||||| ||||||| ||||||    
T  29246462 taatgaatataacaaggtgtcgcaactcattaaccatacactgaacataattaaccaagatttt 29246399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 481
Target Start/End: Complemental strand, 32693546 - 32693471
Alignment:
Q  406 aatgaatataacaaggtgtcacaactcattaattatctactgaacatatttaaccacgattttaaacgtcattaac 481  Q
    ||||||||||| ||||| |||||||||||||| |  | || ||||||| |||| ||| ||||||||||||||||||    
T  32693546 aatgaatataataaggtttcacaactcattaactgcccacagaacataattaaacacaattttaaacgtcattaac 32693471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 12117214 - 12117149
Alignment:
Q  326 attttgacacacgaatttgataacaaatttcgacaacagtttagatggttaacgtagttcaaatat 391  Q
    |||||||||||| ||||||| | |||| ||| |||||| |||| |||||||| |||||||||||||    
T  12117214 attttgacacacaaatttgacatcaaacttcaacaacaatttatatggttaatgtagttcaaatat 12117149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 478
Target Start/End: Original strand, 1913813 - 1913886
Alignment:
Q  405 taatgaatataacaaggtgtcacaactcattaattatctactgaacatatttaaccacgattttaaacgtcatt 478  Q
    |||| ||||||| ||||| ||||||||||| || ||| ||||||||| | ||||||| |||||| ||| |||||    
T  1913813 taattaatataataaggtatcacaactcatgaaatatgtactgaacacaattaaccatgattttgaacttcatt 1913886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 491
Target Start/End: Original strand, 21143744 - 21143830
Alignment:
Q  405 taatgaatataacaaggtgtcacaactcattaattatctactgaacatatttaaccacgattttaaacgtcattaactaggattgtc 491  Q
    ||||||||||||||| |||||||||||||||||| ||| ||||||| || |||||||| ||||| ||| |||||||| | |||||||    
T  21143744 taatgaatataacaaagtgtcacaactcattaatcatccactgaacgtaattaaccacaattttgaacttcattaaccatgattgtc 21143830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 405 - 471
Target Start/End: Complemental strand, 49809251 - 49809185
Alignment:
Q  405 taatgaatataacaaggtgtcacaactcattaattatctactgaacatatttaaccacgattttaaa 471  Q
    ||||||||||||||| |||||||| || |||||||||||| |||||| | |||||||| ||||||||    
T  49809251 taatgaatataacaaagtgtcacatcttattaattatctattgaacaaaattaaccacaattttaaa 49809185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 509
Target Start/End: Complemental strand, 46560783 - 46560678
Alignment:
Q  405 taatgaatataacaaggtgtcacaactcattaattatctactgaacatatttaaccacgattttaaacgtcattaactagga-ttgtcggtgttcaaata 503  Q
    |||| ||||||||||||||||||||||||||||| ||  |||||| | | ||||||||||| || ||| ||||| ||||  | |||  ||||||||||||    
T  46560783 taatcaatataacaaggtgtcacaactcattaatcattcactgaaaacaattaaccacgatcttgaacttcattgactactacttgcaggtgttcaaata 46560684  T
Q  504 tacata 509  Q
    ||||||    
T  46560683 tacata 46560678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 354506 - 354427
Alignment:
Q  324 atattttgacacacgaatttgataacaaatttcgacaacagtttagatggttaacgtagttcaaatatgtggttaattac 403  Q
    ||||||||| |||| ||||||| ||||||||  |||||||  |||||||||||||| |   |||||||||| ||||||||    
T  354506 atattttgatacacaaatttgagaacaaattgtgacaacaacttagatggttaacgcatcacaaatatgtgattaattac 354427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 402
Target Start/End: Original strand, 2301837 - 2301914
Alignment:
Q  325 tattttgacacacgaatttgataacaaatttcgacaacagtttagatggttaacgtagttcaaatatgtggttaatta 402  Q
    ||||||||||||| | ||||||| |||| ||||||||   |||| || |||||   ||||||||||||||||||||||    
T  2301837 tattttgacacacaattttgatatcaaacttcgacaatgatttaaatagttaagaaagttcaaatatgtggttaatta 2301914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 403
Target Start/End: Original strand, 3758630 - 3758666
Alignment:
Q  367 tagatggttaacgtagttcaaatatgtggttaattac 403  Q
    |||||| |||||| |||||||||||||||||||||||    
T  3758630 tagatgattaacgcagttcaaatatgtggttaattac 3758666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 405
Target Start/End: Original strand, 34183232 - 34183324
Alignment:
Q  313 aatcagacatgatattttgacacacgaatttgataacaaatttcgacaacagtttagatggttaacgtagttcaaatatgtggttaattacgt 405  Q
    ||||||| |||||||||||||| ||  |||||| ||||||   |||||||| ||| | ||||||| |   |||||||||| ||||||||||||    
T  34183232 aatcagaaatgatattttgacatactcatttgacaacaaaacccgacaacatttttggtggttaatgccattcaaatatggggttaattacgt 34183324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 403
Target Start/End: Original strand, 3182430 - 3182511
Alignment:
Q  322 tgatattttgacacacgaatttgataacaaatttcgacaacagtttagatggttaacgtagttcaaatatgtggttaattac 403  Q
    |||| |||||| |||  ||||||| ||||||||||||||||  ||||||||||||| |||||| |||||||||| |||||||    
T  3182430 tgatgttttgatacaaaaatttgacaacaaatttcgacaactatttagatggttaaggtagttaaaatatgtggctaattac 3182511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 403
Target Start/End: Complemental strand, 26866988 - 26866926
Alignment:
Q  341 tttgataacaaatttcgacaacagtttagatggttaacgtagttcaaatatgtggttaattac 403  Q
    ||||||| ||| |||||| | || ||| ||||||||||||||||||||||| |||||||||||    
T  26866988 tttgatatcaagtttcgaaaccaatttggatggttaacgtagttcaaatatttggttaattac 26866926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 399
Target Start/End: Original strand, 3606808 - 3606855
Alignment:
Q  352 atttcgacaacagtttagatggttaacgtagttcaaatatgtggttaa 399  Q
    |||| ||||||||||| |||||||| || |||||||||||||||||||    
T  3606808 attttgacaacagtttggatggttatcgcagttcaaatatgtggttaa 3606855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 481
Target Start/End: Complemental strand, 39259429 - 39259375
Alignment:
Q  427 caactcattaattatctactgaacatatttaaccacgattttaaacgtcattaac 481  Q
    ||||||||||| |||  ||| |||||| ||||||| |||||||||||||||||||    
T  39259429 caactcattaactatgcactcaacataattaaccatgattttaaacgtcattaac 39259375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 453
Target Start/End: Complemental strand, 12877515 - 12877467
Alignment:
Q  405 taatgaatataacaaggtgtcacaactcattaattatctactgaacata 453  Q
    ||||||||||||||||||||  |||||||||||| |||||  |||||||    
T  12877515 taatgaatataacaaggtgttgcaactcattaatcatctatagaacata 12877467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 481
Target Start/End: Complemental strand, 21091377 - 21091301
Alignment:
Q  405 taatgaatataacaaggtgtcacaactcattaattatctactgaacatatttaaccacgattttaaacgtcattaac 481  Q
    ||||||||||||||||||||  ||||| |||||||||  | |||||  | |||||||| ||||| || |||||||||    
T  21091377 taatgaatataacaaggtgttccaacttattaattattcattgaacgcaattaaccacaattttgaatgtcattaac 21091301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 37494706 - 37494789
Alignment:
Q  321 atgatattttgacacacgaatttgataacaaatttcgacaacagtttagatggttaacgtagttcaaatatgtggttaattacgt 405  Q
    |||||||||||| |||  ||||||  |||||||||||| |||| ||| ||||||||| | |||||||||||||| ||||||||||    
T  37494706 atgatattttgatacaa-aatttggcaacaaatttcgataacaatttggatggttaatgcagttcaaatatgtgattaattacgt 37494789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 481
Target Start/End: Complemental strand, 21454688 - 21454614
Alignment:
Q  406 aatgaatataacaaggtgtcacaactcattaattatctactgaacatatttaaccacgattttaaacgtcattaac 481  Q
    ||||||||||||||| ||| ||||||||||||| ||||||| ||||  |||||| ||||| || ||||||||||||    
T  21454688 aatgaatataacaagttgttacaactcattaataatctactaaaca-gtttaactacgatgttcaacgtcattaac 21454614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 480
Target Start/End: Original strand, 30942500 - 30942575
Alignment:
Q  405 taatgaatataacaaggtgtcacaactcattaattatctactgaacatatttaaccacgattttaaacgtcattaa 480  Q
    ||||||||||||||||||| ||||| | || ||| ||| | ||||| || |||||||| |||||||||||||||||    
T  30942500 taatgaatataacaaggtgccacaattgataaatcatcgaatgaacgtaattaaccacaattttaaacgtcattaa 30942575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 392
Target Start/End: Complemental strand, 42960773 - 42960706
Alignment:
Q  325 tattttgacacacgaatttgataacaaatttcgacaacagtttagatggttaacgtagttcaaatatg 392  Q
    ||||||||||||| ||||||  |  ||||||||||||||  ||||||||||||| |||||||||||||    
T  42960773 tattttgacacacaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 42960706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 407 - 520
Target Start/End: Complemental strand, 29930029 - 29929916
Alignment:
Q  407 atgaatataacaaggtgtcacaactcattaattatctactgaacatatttaaccacgattttaaacgtcattaactaggattgtcggtgttcaaatatac 506  Q
    |||||||||||||||||||| || |||||||  ||| ||||||| || ||||||||||  || ||| |||||||| |  ||| || ||||||||| | |     
T  29930029 atgaatataacaaggtgtcaaaattcattaaccatccactgaacgtaattaaccacgacattgaacatcattaaccacaattttcagtgttcaaacacaa 29929930  T
Q  507 ataatgtccattaa 520  Q
    || |||||||||||    
T  29929929 atgatgtccattaa 29929916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 321 - 402
Target Start/End: Complemental strand, 42467980 - 42467900
Alignment:
Q  321 atgatattttgacacacgaatttgataacaaatttcgacaacagtttagatggttaacgtagttcaaatatgtggttaatta 402  Q
    ||||||||||||||||  |||||||||   ||||| | ||||| || |||||||||| | ||||||||||||||||||||||    
T  42467980 atgatattttgacacagaaatttgatattgaatttgg-caacaattcagatggttaatgcagttcaaatatgtggttaatta 42467900  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 409 - 462
Target Start/End: Original strand, 19808813 - 19808866
Alignment:
Q  409 gaatataacaaggtgtcacaactcattaattatctactgaacatatttaaccac 462  Q
    ||||||||||||||||||||||||| |||| ||| | |||||||| ||||||||    
T  19808813 gaatataacaaggtgtcacaactcagtaatcatccattgaacataattaaccac 19808866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 402
Target Start/End: Original strand, 4364243 - 4364297
Alignment:
Q  348 acaaatttcgacaacagtttagatggttaacgtagttcaaatatgtggttaatta 402  Q
    |||||||| ||||||| ||||||| ||||||| | ||||||||||| ||||||||    
T  4364243 acaaattttgacaacaatttagatagttaacgcaattcaaatatgtagttaatta 4364297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 481
Target Start/End: Complemental strand, 30066800 - 30066727
Alignment:
Q  408 tgaatataacaaggtgtcacaactcattaattatctactgaacatatttaaccacgattttaaacgtcattaac 481  Q
    ||||||| |||||||||| ||||||| |||  ||||| ||||| || |||| || |||||| ||||||||||||    
T  30066800 tgaatatgacaaggtgtcgcaactcactaaccatctattgaacgtagttaagcatgattttcaacgtcattaac 30066727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 437
Target Start/End: Complemental strand, 19809083 - 19809051
Alignment:
Q  405 taatgaatataacaaggtgtcacaactcattaa 437  Q
    |||||||||||||||||||| ||||||||||||    
T  19809083 taatgaatataacaaggtgttacaactcattaa 19809051  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 17843915 - 17843951
Alignment:
Q  369 gatggttaacgtagttcaaatatgtggttaattacgt 405  Q
    |||||||||||||||| ||||||||||||||||||||    
T  17843915 gatggttaacgtagtttaaatatgtggttaattacgt 17843951  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 405
Target Start/End: Original strand, 41194731 - 41194811
Alignment:
Q  325 tattttgacacacgaatttgataacaaatttcgacaacagtttagatggttaacgtagttcaaatatgtggttaattacgt 405  Q
    |||||||| | || ||||||| || ||||||||| |||| |||  ||||| |||| ||||||||||||||||| |||||||    
T  41194731 tattttgatatacaaatttgacaataaatttcgaaaacaatttgtatggtaaacgcagttcaaatatgtggttcattacgt 41194811  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 481
Target Start/End: Original strand, 42813504 - 42813581
Alignment:
Q  405 taatgaatataacaaggtgtcacaa-ctcattaattatctactgaacatatttaaccacgattttaaacgtcattaac 481  Q
    |||| ||||||||||||| |||||| |||||| || ||| ||| |||||| ||||||| |||||| || |||||||||    
T  42813504 taattaatataacaaggtatcacaacctcattgatcatccactaaacataattaaccatgattttcaatgtcattaac 42813581  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 478
Target Start/End: Complemental strand, 121395 - 121324
Alignment:
Q  407 atgaatataacaaggtgtcacaactcattaattatctactgaacatatttaaccacgattttaaacgtcatt 478  Q
    |||||||||||||||||||||||||||||||  ||| ||| ||| ||  || |||| ||||||| |||||||    
T  121395 atgaatataacaaggtgtcacaactcattaaccatccactaaacgtaaatatccacaattttaagcgtcatt 121324  T

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Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 437
Target Start/End: Complemental strand, 114628 - 114598
Alignment:
Q  407 atgaatataacaaggtgtcacaactcattaa 437  Q
    |||||||||||||||||||||||||||||||    
T  114628 atgaatataacaaggtgtcacaactcattaa 114598  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 481
Target Start/End: Original strand, 29858438 - 29858512
Alignment:
Q  406 aatgaatataacaaggtgtcacaactcattaattatctactgaacatatttaaccacgattttaaacgtcattaac 481  Q
    |||||||||||||||||| | |||||||||||  |||||||||||| | ||||||| |||||  ||| ||||||||    
T  29858438 aatgaatataacaaggtg-cgcaactcattaaccatctactgaacacaattaaccatgatttagaacatcattaac 29858512  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 11791990 - 11792066
Alignment:
Q  326 attttgacacacgaatttgataacaaatttcgacaacagtttagatggttaacgtagttcaaatatgtggttaatta 402  Q
    ||||||||| | |||||||| | |||||||||||||||  ||||| |||||||  | |||| |||||||||| ||||    
T  11791990 attttgacataagaatttgacatcaaatttcgacaacaaattagacggttaacacaattcacatatgtggttgatta 11792066  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 397
Target Start/End: Original strand, 29858339 - 29858415
Alignment:
Q  321 atgatattttgacacacgaatttgataacaaatttcgacaacagtttagatggttaacgtagttcaaatatgtggtt 397  Q
    ||||| |||||| |||  ||||||| | |||||||||||  || |||||| ||||||| || |||||||||||||||    
T  29858339 atgattttttgaaacaaaaatttgacatcaaatttcgacgtcaatttagaaggttaacataattcaaatatgtggtt 29858415  T

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