View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_low_8 (Length: 515)
Name: NF13999_low_8
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 20 - 497
Target Start/End: Complemental strand, 35631898 - 35631423
Alignment:
| Q |
20 |
tattacaaaaaattacagctaagtttgtatctggtaatttcactccttttcaatttcatcattcatcatcatcacactatcacgtagctggtcatttctc |
119 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35631898 |
tattacaaaaaattacagctaagtttttatctggtaatttcactccttttcaatttcatcattcatcatcatcacactatcacgtagctggtcatttctc |
35631799 |
T |
|
| Q |
120 |
aaccatttaatcaatcttaattaggatgagaccnnnnnnntgtttcaatttttacttataaaagaacaacattacaaaattttaagaaacgtaacaagac |
219 |
Q |
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| T |
35631798 |
aaccacttaatcaatcttaattaggatgagaccaaaaaaatgtttcaatttttacttataaaagaacaacattacaaaattttaagaaacgtaacaagac |
35631699 |
T |
|
| Q |
220 |
caagatgaaggcaaaaacaaaaaccttgattccttcactactcacgtattgtcatgcatgcgtcatgttcctcccaattcctgtgacttgtctctgtttt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35631698 |
caagatgaaggcaaaaacaaaaaccttgattccttcactactcacgtgttgtcatgcatgcgtcatgttcctcccaattcctgtgacttgtctctg-ttt |
35631600 |
T |
|
| Q |
320 |
tgtgtccaaaacgaagctatgccacgtgtcacttccattcatcgcaccttatatattcatcttcatcatctcaattattcacttcattgttttgttgttg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35631599 |
tgtgtccaaaacgaagctatgccacgtgtcacttccattcattgcaccttatatattcatcttcatcatctcaattattcacttcattgttttctttgaa |
35631500 |
T |
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| Q |
420 |
ttttgtagatatggctcctccaagtttacttgaaacagtgacaggtttggagaactttttattaatttaatctaataa |
497 |
Q |
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| T |
35631499 |
ttttgtagatatggctcctccaagtttacttgaaacagcgacaggtttgga-aactttttattaatttaatctaataa |
35631423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 35636590 - 35636509
Alignment:
| Q |
62 |
ctccttttcaatttcatcattcatcatcatcacactatcacgta-gctggtcatttctcaaccatttaatcaatcttaatta |
142 |
Q |
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||||||||||||||||||||||| ||||||||||||||| ||| ||| || |||| |||||| |||||||||||| |||| |
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| T |
35636590 |
ctccttttcaatttcatcattcaaaatcatcacactatcatgtacgctcttcttttcccaaccacttaatcaatctttatta |
35636509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 35636503 - 35636460
Alignment:
| Q |
160 |
tgtttcaatttttacttataaaagaacaacattacaaaatttta |
203 |
Q |
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| T |
35636503 |
tgtttcaatttttacttataattgaacatcattacaaaatttta |
35636460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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