View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13999_low_9 (Length: 509)
Name: NF13999_low_9
Description: NF13999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13999_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 20 - 509
Target Start/End: Original strand, 25497918 - 25498407
Alignment:
| Q |
20 |
gactaacgccgcgaacaccctttcccgtctccaccactcccaccttagcaattagcctatccactccattgatatttccttgttgcttaactccattaga |
119 |
Q |
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| T |
25497918 |
gactaacgccgcgaacaccctttcctgtctccaccactcccaccttagcaattagcctatccactccattgatatttccttgttgcttaactccattaga |
25498017 |
T |
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| Q |
120 |
aaatttctcaaaagaagtaggtaaagaatagcaactagtgggtgaagaaggaacaattgcccttgaattcaatgacttcaatcttgttaacttttccttc |
219 |
Q |
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| T |
25498018 |
aaatttctcaaaagaagtaggtaaagaatagcaactagtgggtgaagaaggaacaatagcccttgaattcaatgacttcaatcttgttaacttttccttc |
25498117 |
T |
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| Q |
220 |
ttcacaaaatcaacaacagaatcttttgctgtctgagatttacatctacctaaaaacattgatttcttatcaacttgttcttgatgattctccaacactt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25498118 |
ttcacaaaatcaacaacagaatcttttgctgtctgagatttacatctacctaaaaccattgatttcttatcaacttgttcttgatgattctccaacactt |
25498217 |
T |
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| Q |
320 |
tcattggagaggacttggaacaaacaccattcctcttaaccttaaccacaaaagcattgcgaagaaaaccaagttagttagttgcaacactatcttcagg |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| |||||||||||||| |||||||||| |
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| T |
25498218 |
tcattggagaggacttggaacaaacaccattcctcttaaccttaacctcagaagcattgctaagaaaaccaagtgagttagttgcaacaatatcttcagg |
25498317 |
T |
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| Q |
420 |
tgttccaacccaagcatgtcttccagggacaggctttacaccacgaagaagcggtacgggcgaagccgcttcgaaccgatcaacaaaaac |
509 |
Q |
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| T |
25498318 |
tgttccaacacaagcatgtcttccaggaacaggcctaacaccacgaagaatcggaacaggcgaagcagcttcgaaccgatcaacaaaaac |
25498407 |
T |
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