View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1399_high_1 (Length: 841)

Name: NF1399_high_1
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1399_high_1
NF1399_high_1
[»] chr2 (5 HSPs)
chr2 (353-718)||(13432017-13432394)
chr2 (165-332)||(13434892-13435059)
chr2 (163-323)||(20588276-20588436)
chr2 (170-236)||(20587208-20587274)
chr2 (784-815)||(13431919-13431950)
[»] scaffold0524 (2 HSPs)
scaffold0524 (163-323)||(8886-9046)
scaffold0524 (163-231)||(7852-7920)
[»] scaffold0472 (2 HSPs)
scaffold0472 (163-323)||(9102-9262)
scaffold0472 (163-320)||(10263-10420)
[»] chr1 (2 HSPs)
chr1 (163-323)||(46651443-46651603)
chr1 (163-323)||(46652598-46652758)
[»] chr8 (4 HSPs)
chr8 (168-323)||(35506750-35506905)
chr8 (174-236)||(35505691-35505753)
chr8 (259-321)||(35750203-35750265)
chr8 (170-231)||(35750693-35750753)
[»] chr5 (3 HSPs)
chr5 (163-323)||(42775502-42775662)
chr5 (163-332)||(37986316-37986485)
chr5 (163-236)||(42776635-42776708)
[»] chr4 (5 HSPs)
chr4 (171-323)||(39929179-39929331)
chr4 (171-289)||(39928049-39928167)
chr4 (171-236)||(46253144-46253209)
chr4 (168-231)||(5236409-5236472)
chr4 (163-210)||(5236904-5236951)
[»] chr7 (6 HSPs)
chr7 (171-289)||(43545458-43545576)
chr7 (163-236)||(25008251-25008324)
chr7 (163-236)||(28848723-28848796)
chr7 (163-236)||(28849795-28849868)
chr7 (163-323)||(25009302-25009462)
chr7 (163-236)||(43546547-43546620)
[»] chr3 (5 HSPs)
chr3 (163-236)||(8391560-8391633)
chr3 (163-236)||(45982626-45982699)
chr3 (163-323)||(8392620-8392780)
chr3 (172-323)||(45981489-45981640)
chr3 (168-210)||(46725112-46725154)
[»] scaffold0018 (1 HSPs)
scaffold0018 (163-236)||(193760-193833)
[»] scaffold0369 (1 HSPs)
scaffold0369 (163-236)||(8096-8170)


Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 353 - 718
Target Start/End: Complemental strand, 13432394 - 13432017
Alignment:
Q  353 aagatgaaacgtaaaaacacgccaacttaaaggaacgtttttacatatttaagtcaataaataatacacatttccatcattttgtttatggcttcctttg 452  Q
    ||||||||  |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13432394 aagatgaattgtaaaaacacaccaacttaaaggaacatttttacatatttaagtcaataaataatacacatttccatcattttgtttatggcttccttta 13432295  T
Q  453 tagtaacgaaagcaaccaagtcttgacatggacatttatgggattaaggcacagtatagtaacgctgtcacaatgagcca------------tgttgcag 540  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| |||||||||            ||||||||    
T  13432294 tagtaacgaaagcaaccaagtcttgacctggacatttatgggattaaggcactgtatagtaacactgtcagaatgagccaatttgattttcatgttgcag 13432195  T
Q  541 tggtccaatctaaaagccctccctgtccttgcacgtggctctgggttatgcttcaatatgaaggtccacaaaccgtacaattgaggagcattcgtttgct 640  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13432194 tggtccaatctaaaagccctccctatccttgcacgtggctctgggttatgcttcaatatgaaggtccacaaaccgtacaattgaggagcattcgtttgct 13432095  T
Q  641 ttattttttagaagatatttttacgatataagttatcataaaaatttgtatgaaaaacagaaacctttactacaatat 718  Q
    |||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  13432094 ttattttttagaagatatttttacaatataaattgtcataaaaatttgtatgaaaaacagaaacctttactacaatat 13432017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 165 - 332
Target Start/End: Complemental strand, 13435059 - 13434892
Alignment:
Q  165 ttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgaccata 264  Q
    ||||| || |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| |||||||| |||||||||| ||||| |    
T  13435059 ttctgatctctcctttctagccgctcatcatttctcttgacacataaacatgcttttgccaactcacccttcgtcatatgtctctatgtctacgaccaca 13434960  T
Q  265 acgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaatgatagttt 332  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13434959 acgtttttgtaataggagttaacggaagataataattacaaacggttagcaacttacaatgatagttt 13434892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 163 - 323
Target Start/End: Original strand, 20588276 - 20588436
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 262  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||  || |||||||||||||||||||||  ||  ||| |||| ||||   ||||    
T  20588276 ggttttggtccctcctttctagccactcatcatctctcttgacacataagcaagcttttgccaactcacacttcaccacgtgtgtctacgtctgccacca 20588375  T
Q  263 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 323  Q
     |||||||||||||  ||||||||||| ||  || |||| |||||| || |||||||||||    
T  20588376 caacgtttttgtaacgggagttaacgggagggacgaattgcaaacgattggcaacttacaa 20588436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 20587274 - 20587208
Alignment:
Q  170 gtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 236  Q
    |||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||    
T  20587274 gtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttc 20587208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 784 - 815
Target Start/End: Complemental strand, 13431950 - 13431919
Alignment:
Q  784 tatgtcataaaagggttgcttttttcctacaa 815  Q
    ||||||||||||||||||||||||||||||||    
T  13431950 tatgtcataaaagggttgcttttttcctacaa 13431919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 163 - 323
Target Start/End: Original strand, 8886 - 9046
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 262  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||   | |||||||||||||||||||||  ||  ||| |||  |||||  ||||    
T  8886 ggttttggtccctcctttctagccactcatcatctctcttgacacataacaaagcttttgccaactcacacttcaccacgtgtgtctccgtctaccacca 8985  T
Q  263 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 323  Q
     |||||||||||||  ||||||||||| ||  || |||| |||||| || |||||||||||    
T  8986 caacgtttttgtaacgggagttaacgggagggacgaattgcaaacgattggcaacttacaa 9046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 7920 - 7852
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcac 231  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||  || ||||||||||||||||    
T  7920 ggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcac 7852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 163 - 323
Target Start/End: Complemental strand, 9262 - 9102
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 262  Q
    |||| ||||| |||||||||||||  ||||||||||||||||||||||  || |||||||||||||||||||||  ||  ||| ||| |||||   ||||    
T  9262 ggttttggtctctcctttctagccattcatcatctctcttgacacataagcaagcttttgccaactcacacttcaccacgtgtgtctctgtctgccacca 9163  T
Q  263 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 323  Q
     |||||||||||||  ||||||||||| ||  || |||| |||||| || |||||||||||    
T  9162 caacgtttttgtaacgggagttaacgggagggacgaattgcaaacgattggcaacttacaa 9102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 163 - 320
Target Start/End: Original strand, 10263 - 10420
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 262  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||  || ||||||| |||||||||||||  ||  ||| |||  ||||   ||||    
T  10263 ggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgtcaactcacacttcgccacgtgtgtctccgtctgccacca 10362  T
Q  263 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaactta 320  Q
     |||||||||||||  ||||||||||| ||  || |||| ||||||| ||| ||||||    
T  10363 caacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaactta 10420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 163 - 323
Target Start/End: Complemental strand, 46651603 - 46651443
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 262  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||  || |||||||||||||||||||||  ||  ||| |||  ||||   ||||    
T  46651603 ggttttggtccctcctttctagccactcatcatctctcttgacacataagcaagcttttgccaactcacacttcaccacgtgtgtctccgtctgccacca 46651504  T
Q  263 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 323  Q
     |||||||||||||  ||||||||||| ||  |  |||| |||||| || |||||||||||    
T  46651503 caacgtttttgtaacgggagttaacgggagggatgaattgcaaacgattggcaacttacaa 46651443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 163 - 323
Target Start/End: Original strand, 46652598 - 46652758
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 262  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||  |   ||| |||  ||||   ||||    
T  46652598 ggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttcgccgcgtgtgtctccgtctgccacca 46652697  T
Q  263 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 323  Q
    ||||||||||||||  ||||||||||| ||  || |||| ||||||| ||| |||||||||    
T  46652698 taacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaa 46652758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 9e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 168 - 323
Target Start/End: Original strand, 35506750 - 35506905
Alignment:
Q  168 tggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgaccataacg 267  Q
    |||||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||  | | ||| |||  ||||   |||| ||||    
T  35506750 tggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttcgccgtgtgtgtctccgtctgccaccacaacg 35506849  T
Q  268 tttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 323  Q
    |||||||||  ||||||||||| ||  || |||| ||||||| ||| |||||||||    
T  35506850 tttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaa 35506905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 35505753 - 35505691
Alignment:
Q  174 ctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 236  Q
    ||||||||||||| |||||||||||| |||| |||||   | |||||||||||||||||||||    
T  35505753 ctcctttctagccactcatcatctcttttgaaacataagaaagcttttgccaactcacacttc 35505691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 35750265 - 35750203
Alignment:
Q  259 accataacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttac 321  Q
    |||| |||||||||||||| ||| ||||||| ||| ||||||| |||||||||| ||||||||    
T  35750265 accacaacgtttttgtaatgggaattaacgggagagactaattgcaaacggttaacaacttac 35750203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 35750693 - 35750753
Alignment:
Q  170 gtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcac 231  Q
    ||||||||||| ||||| ||||| | |||||||||||||||  ||||| |||||||||||||    
T  35750693 gtccctcctttttagccactcattagctctcttgacacataagcatgc-tttgccaactcac 35750753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 163 - 323
Target Start/End: Complemental strand, 42775662 - 42775502
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 262  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||  |   ||| |||  ||||   ||||    
T  42775662 ggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttcgccgcgtgtgtctccgtctgccacca 42775563  T
Q  263 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 323  Q
     |||||||||||||  ||||||||||| ||  || |||| ||||||| ||| |||||||||    
T  42775562 caacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaa 42775502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 163 - 332
Target Start/End: Original strand, 37986316 - 37986485
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 262  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||  | || ||||| |||||||| ||||  ||| ||| ||| |||||   ||||    
T  37986316 ggttctggtccctcctttctagccactcatcatctctcttgacatataagcctgtttttgtcaactcacccttcgccatgtgtgtctctgtctgccacca 37986415  T
Q  263 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaatgatagttt 332  Q
     ||||||||||||   ||||||||  | ||  ||| ||| ||||| |||| |||||||||||||| ||||    
T  37986416 caacgtttttgtagcgggagttaagtggagggactgattgcaaacagttaacaacttacaatgatggttt 37986485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 42776635 - 42776708
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 236  Q
    |||| ||||| ||||||||||||| |||||||||||||||||||||||  || ||||||||||||||| |||||    
T  42776635 ggttttggtctctcctttctagccactcatcatctctcttgacacataagcaagcttttgccaactcagacttc 42776708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 171 - 323
Target Start/End: Original strand, 39929179 - 39929331
Alignment:
Q  171 tccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgaccataacgttt 270  Q
    ||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||  |   ||| |||  ||||   ||||||||||||    
T  39929179 tccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttcgccgcgtgtgtctccgtctgccaccataacgttt 39929278  T
Q  271 ttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 323  Q
    ||||||  ||||||||||| ||  || |||| ||||||| ||| |||||||||    
T  39929279 ttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaa 39929331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 171 - 289
Target Start/End: Complemental strand, 39928167 - 39928049
Alignment:
Q  171 tccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgaccataacgttt 270  Q
    |||||||||||||||| | |||||||||||||||||||||  || |||||||||||||||||||||  || |||| |||  ||||   |||| |||||||    
T  39928167 tccctcctttctagccacgcatcatctctcttgacacataagcaagcttttgccaactcacacttcaccacatgtgtctccgtctgccaccacaacgttt 39928068  T
Q  271 ttgtaattggagttaacgg 289  Q
    ||||||  |||||||||||    
T  39928067 ttgtaacgggagttaacgg 39928049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 46253209 - 46253144
Alignment:
Q  171 tccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 236  Q
    ||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||    
T  46253209 tccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttc 46253144  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 5236472 - 5236409
Alignment:
Q  168 tggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcac 231  Q
    ||||||||||||||||||| |||||||||||||||||||||||    |||||||||||||||||    
T  5236472 tggtccctcctttctagccactcatcatctctcttgacacataattctgcttttgccaactcac 5236409  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 5236904 - 5236951
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacata 210  Q
    |||| ||||||||||||||||||| ||| |||||||||||||||||||    
T  5236904 ggttttggtccctcctttctagccactcgtcatctctcttgacacata 5236951  T

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Target: chr7 (Bit Score: 51; Significance: 9e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 171 - 289
Target Start/End: Complemental strand, 43545576 - 43545458
Alignment:
Q  171 tccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgaccataacgttt 270  Q
    |||||||||||||||| |||||||||||||||||||||||   | |||||||||||||||||||||  || |||| |||  ||||   |||| |||||||    
T  43545576 tccctcctttctagccactcatcatctctcttgacacataaggaagcttttgccaactcacacttcaccacatgtgtctccgtctgccaccacaacgttt 43545477  T
Q  271 ttgtaattggagttaacgg 289  Q
    ||||||  |||||||||||    
T  43545476 ttgtaacgggagttaacgg 43545458  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 25008324 - 25008251
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 236  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||    
T  25008324 ggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttc 25008251  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 28848796 - 28848723
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 236  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||    
T  28848796 ggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttc 28848723  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 28849795 - 28849868
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 236  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||    
T  28849795 ggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttc 28849868  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 163 - 323
Target Start/End: Original strand, 25009302 - 25009462
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 262  Q
    |||| |||||||||||||||||||  |||||||||||| |||||||||  || |||||||||||||||||||||  ||| ||| |||  ||||   ||||    
T  25009302 ggttttggtccctcctttctagccattcatcatctctcctgacacataagcaagcttttgccaactcacacttcaccatgtgtgtctccgtctgccacca 25009401  T
Q  263 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 323  Q
     |||||||||||||   |||||||||| ||  |  |||| |||||| || |||||||||||    
T  25009402 caacgtttttgtaacgagagttaacgggagggatgaattgcaaacgattggcaacttacaa 25009462  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 43546547 - 43546620
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 236  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||  ||  ||||||||||||||||||||    
T  43546547 ggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaaacttttgccaactcacacttc 43546620  T

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Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 8391633 - 8391560
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 236  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||    
T  8391633 ggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttc 8391560  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 45982626 - 45982699
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 236  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||||||  || |||||||||||||||||||||    
T  45982626 ggttttggtccctcatttctagccactcatcatctctcttgacacataagcaagcttttgccaactcacacttc 45982699  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 163 - 323
Target Start/End: Original strand, 8392620 - 8392780
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 262  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||||||  || |||||||||||||||||| ||  ||  ||| |||  ||||   ||||    
T  8392620 ggttttggtccctcttttctagccactcatcatctctcttgacacataagcaagcttttgccaactcacacctcaccacgtgtgtctccgtctgccacca 8392719  T
Q  263 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 323  Q
     |||||||||||||  ||||||||||| ||  |  |||| |||||| || |||||||||||    
T  8392720 caacgtttttgtaacgggagttaacgggagggatgaattgcaaacgattggcaacttacaa 8392780  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 172 - 323
Target Start/End: Complemental strand, 45981640 - 45981489
Alignment:
Q  172 ccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgaccataacgtttt 271  Q
    |||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||  |   ||| |||  ||||   |||| ||||||||    
T  45981640 ccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttcgccgcgtgtgtctccgtctgcaaccacaacgtttt 45981541  T
Q  272 tgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 323  Q
    |||||  ||||||||||| ||  || |||| ||||||| ||| |||||||||    
T  45981540 tgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaa 45981489  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 46725112 - 46725154
Alignment:
Q  168 tggtccctcctttctagccgctcatcatctctcttgacacata 210  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||    
T  46725112 tggtcccccctttctagccactcatcatctctcttgatacata 46725154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 193833 - 193760
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 236  Q
    |||| |||||||||||||||| || ||||||||| |||||||||||||  || |||||||||||||||||||||    
T  193833 ggttttggtccctcctttctaaccactcatcatcgctcttgacacataagcaagcttttgccaactcacacttc 193760  T

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Target: scaffold0369 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 8096 - 8170
Alignment:
Q  163 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgc-ttttgccaactcacacttc 236  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||  || || |||| ||||||||||||||    
T  8096 ggttttggtccctcctttctagccactcatcatctctcttgacacataagcaagcttttttccaactcacacttc 8170  T

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