View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_high_15 (Length: 431)
Name: NF1399_high_15
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_high_15 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 431
Target Start/End: Original strand, 43055121 - 43055550
Alignment:
| Q |
10 |
tcataggtgcttatacnnnnnnngaagttatattattatactagagtactgagagtatatattctttagtttggacaatccaaagagtaattgaaatgat |
109 |
Q |
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| T |
43055121 |
tcataggtgcttatactttttttgaagttatattattatactagagtactgagagtatatattctttagtttggacaatccaaagagtaattgaaatgat |
43055220 |
T |
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| Q |
110 |
actacttgttgatatgttttctttatacgaaatatatgtccttttcgattttagtagaagttcttttagaacaatgataggctttgtgcatcgctcttga |
209 |
Q |
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| T |
43055221 |
actacttgttgatatgttttctttatacgaaatatatgtccttttcgattttagtagaagttcttttagaacaatgataggctttgtgcatcgctcttga |
43055320 |
T |
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| Q |
210 |
cgcgtttctctatattcccatatggatgtttacaaaatttctat---------aagcgaggtttgggagtgttgctatccattgatattgttcggtttgg |
300 |
Q |
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| T |
43055321 |
cgcgtttctttatattcccatatggatgtttacaaaatttctataggtgatgaaggtgaggtttgggagtgttgctatccattgatattgttcggtttgg |
43055420 |
T |
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| Q |
301 |
gtaaaccaagagattactgaatagataaccaacactattgtgttaatatcatcgacttaaatttgaaactaattttttctgcttaagnnnnnnnnaaaat |
400 |
Q |
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| T |
43055421 |
gtaaaccaagagattactgaatagataaccaacactattgtgttaatatcatcgacttaaa-ttgaaactaattttttctgcttaagttttttttaaaat |
43055519 |
T |
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| Q |
401 |
ttaaaatttgcatttataaagttgcaatcac |
431 |
Q |
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| T |
43055520 |
ttaaaatttgcatttataaagttgcaatcac |
43055550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 191 - 306
Target Start/End: Original strand, 14524979 - 14525093
Alignment:
| Q |
191 |
ctttgtgcatcgctcttgacgcgtttctctatattcccatatggatgtttacaaaatttctataagcgaggtttgggagtgttgctatccattgatattg |
290 |
Q |
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| T |
14524979 |
ctttgagcattgctctagatgcatttctttatattcccatatggatgtttacaaaatttcta-aggtgagatttaggagtgttgttatccattgatatag |
14525077 |
T |
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| Q |
291 |
ttcggtttgggtaaac |
306 |
Q |
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| T |
14525078 |
tcgggtttgggtaaac |
14525093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 14524909 - 14524966
Alignment:
| Q |
67 |
tatattctttagtttggacaatccaaagagtaattgaaatgatactacttgttgatat |
124 |
Q |
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| T |
14524909 |
tatattcttaagtttggacaatctaaagagcaaccagaatgatactacttgttgatat |
14524966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 44804643 - 44804708
Alignment:
| Q |
51 |
tagagtactgagagtatatattctttagtttggacaatccaaagagtaattgaaatgatactacttg |
117 |
Q |
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| T |
44804643 |
tagagtactgagagtgtatagtctt-aggttgaacgatccaaagagtaattggaatgatactacttg |
44804708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 429
Target Start/End: Original strand, 44805077 - 44805109
Alignment:
| Q |
397 |
aaatttaaaatttgcatttataaagttgcaatc |
429 |
Q |
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| T |
44805077 |
aaatttaaaattttcatttataaagttgcaatc |
44805109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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