View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_high_2 (Length: 672)
Name: NF1399_high_2
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 54 - 416
Target Start/End: Complemental strand, 41785700 - 41785339
Alignment:
| Q |
54 |
aattatgattaatttaagattcacttaaacattaacgaatcttcaattttgctcaccaaactctctaactgcttaattttttg-atgtttcttgctaaat |
152 |
Q |
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| T |
41785700 |
aattatggttaatttaagattcactcaaacattaacgaatcttcaattctgctcaccaaactctctaactgcttaattttttttatgtttcttgctaaat |
41785601 |
T |
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| Q |
153 |
gaaaaataaaacagaaccgaaaggaacaaatcatcaactcaaatgtcattagcatgttactaaagattagggaaaaatcaatttcaaccaccgtgcataa |
252 |
Q |
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| T |
41785600 |
gaaaaataaaacagaaccgaaaggaacaaatcatcaactcaaatgtcattagcatgttactatagattagggaaaaatcaagttcaaccaccatgcataa |
41785501 |
T |
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| Q |
253 |
agtatatatatttggtcaccactcaccatccgatcacatgcaaaccagtacaaaggcaagctaaataggnnnnnnnnaaggaagaagctagctagatagg |
352 |
Q |
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| T |
41785500 |
ag--aatatatttggtcaccactcaccatccgatcacatgcaaaccagtacaaaggcaagctaaataggttttttttaaggaagaagctagctagatagg |
41785403 |
T |
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| Q |
353 |
ttaaacgtggatgattgattagtgaaccttaatgaagcataatactattaagaatatttctaaa |
416 |
Q |
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| T |
41785402 |
ttaaatgtggatgattgattagtgaaccttaatgaagcataatactattaagaatatttctaaa |
41785339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 406 - 665
Target Start/End: Complemental strand, 41785277 - 41785019
Alignment:
| Q |
406 |
atatttctaaattcaatatatcgatcctccaatttaaatgtttattttattcttgtatattttgaggctatatttttgataatataacaattgaaatgtt |
505 |
Q |
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| T |
41785277 |
atatctctaaatttaatatattggtcctccaatttgaatgtttattttactcttgtgtattttgaggttatatttt-gataatataacaattgagatgtt |
41785179 |
T |
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| Q |
506 |
tatgtgacaacttaatcgatcacatgacatatttagatgaattttcacttaacttaactttcattttctcgaacatacatttaacttatatcataaaagt |
605 |
Q |
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| T |
41785178 |
tatgtgacaacttagtcgatcacatgacatatttagatgaatttttacttaacttagctttcattttctcgaacatacatttaacttatatcataaaagt |
41785079 |
T |
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| Q |
606 |
tactacatttaatgcaccctcagtagcatcaatctagttggataactcattttcatctca |
665 |
Q |
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| T |
41785078 |
tactacatttaatgcaccctcagtagcatcaatctagttggataactcattttcatctca |
41785019 |
T |
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