View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_high_25 (Length: 383)
Name: NF1399_high_25
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_high_25 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 26832995 - 26832610
Alignment:
| Q |
1 |
tatcattgacgctaacattggagacgaaaatcattttttccatctataattcaagctttttaaggagtgttaataattattaatagcaagtcaatggact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832995 |
tatcattgacgctaacattggagacgaaaatcattttttccatctctaattcaagctttttaaggagtgttaataattattaatagcaagtcaatggact |
26832896 |
T |
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| Q |
101 |
aatgatagggttaagtttgtattaaaaggtgattgtgaatgattgtggcaaatgaacaaacaaaaaatgcaggagttggtacaagtagaatgccgtagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832895 |
aatgatagggttaagtttgtattaaaaggtgattgtgaatgattgtggcaaatgaacaaacaaaaaatgcaggagttggtacaagtagaatgccgtagat |
26832796 |
T |
|
| Q |
201 |
ggagaagcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatgtgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832795 |
ggagaagcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatgtgaa |
26832696 |
T |
|
| Q |
301 |
acaatgtgatgatgtccatctcat---tgctgattttcaaccagaacctgattttctttggcgaaccatccctttccttgttaata |
383 |
Q |
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|||||||||| |||| | || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832695 |
acaatgtgattatgttgctatctttgatgctgattttcaaccagaacctgattttctttggcgaaccatccctttccttgttaata |
26832610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 97 - 383
Target Start/End: Complemental strand, 26786178 - 26785892
Alignment:
| Q |
97 |
gactaatgatagggttaagtttgtattaaaaggtgattgtgaatgattgtggcaaatgaacaaacaaaaaatgcaggagttggtacaagtagaatgccgt |
196 |
Q |
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|||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| | |||||||||| |
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| T |
26786178 |
gactaatgat-gggataaatttgtattaaa-ggtgattgtgaatgattgtggcaagtgaacaaa-aaaaattgcaggagttggtacaggaagaatgccgt |
26786082 |
T |
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| Q |
197 |
agatggagaagcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatg |
296 |
Q |
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|||||| ||| |||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||| ||| |
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| T |
26786081 |
agatggcgaaacaaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatg |
26785982 |
T |
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| Q |
297 |
tgaaacaatgtgatgatgt--ccatc-tcattgctgattttcaaccagaacctgattttctttggcgaaccatccctttccttgttaata |
383 |
Q |
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| T |
26785981 |
tcctacaatgtgaatatgttgccatctttgatgctgattttcaacctgaacctgatttcctctgccaaaccattcctttccttgtcaata |
26785892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 162 - 383
Target Start/End: Complemental strand, 26791856 - 26791632
Alignment:
| Q |
162 |
aaaaaatgcaggagttggtacaagtagaatgccgtagatggagaagcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagc |
261 |
Q |
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|||||||||||||||| ||||| | |||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |
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| T |
26791856 |
aaaaaatgcaggagtttgtacaggaagaatgccgtagatggcgaaacaaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagc |
26791757 |
T |
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| Q |
262 |
aggtgcattaaaggagggaatgaaacatagctatgtgaaacaatgtgatgatgt--ccatc-tcattgctgattttcaaccagaacctgattttctttgg |
358 |
Q |
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||||| |||||||||||||||||||||| |||| ||||||||| |||| ||||| | ||||||||||||||| |||||||||||||| |
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| T |
26791756 |
tggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgccatctttgatgctgattttcaacctgaacctgattttctcctc |
26791657 |
T |
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| Q |
359 |
cgaaccatccctttccttgttaata |
383 |
Q |
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|||||||||||||| ||||| |||| |
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| T |
26791656 |
cgaaccatcccttttcttgtcaata |
26791632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 170 - 383
Target Start/End: Complemental strand, 26822749 - 26822533
Alignment:
| Q |
170 |
caggagttggtacaagtagaatgccgtagatggagaagcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcat |
269 |
Q |
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||||| |||||||| | |||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| |
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| T |
26822749 |
caggaattggtacaggaagaatgccgtagatggcgaaacaaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctc |
26822650 |
T |
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| Q |
270 |
taaaggagggaatgaaacatagctatgtgaaacaatgtgatgatgt--ccatc-tcattgctgattttcaaccagaacctgattttctttggcgaaccat |
366 |
Q |
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|||||||||||||||||||||| |||| ||||||||| |||| ||||| | ||||||||||||||| |||||||| ||||| | ||||| || |
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| T |
26822649 |
taaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgccatctttgatgctgattttcaacctgaacctgactttctccgccgaacgat |
26822550 |
T |
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| Q |
367 |
ccctttccttgttaata |
383 |
Q |
| |
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|||||| ||||| |||| |
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| T |
26822549 |
cccttttcttgtcaata |
26822533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 302
Target Start/End: Original strand, 41546207 - 41546312
Alignment:
| Q |
197 |
agatggagaagcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatg |
296 |
Q |
| |
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||||||||||| ||||| | || ||||||||||| | ||||| |||||||||||||||||||| ||||| | || || |||||||| |||||||||| |
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| T |
41546207 |
agatggagaagaaaaggcataaacataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatg |
41546306 |
T |
|
| Q |
297 |
tgaaac |
302 |
Q |
| |
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| |||| |
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| T |
41546307 |
tcaaac |
41546312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 162 - 315
Target Start/End: Original strand, 41917396 - 41917549
Alignment:
| Q |
162 |
aaaaaatgcaggagttggtacaagtagaatgccgtagatggagaagcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagc |
261 |
Q |
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|||||||| |||||||||| ||| ||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41917396 |
aaaaaatgtaggagttggtgcaactagaatgccaaagatgggcaagcaaaggagtgaatataaagtatgaagttagggacaatagaaatggatacaaagc |
41917495 |
T |
|
| Q |
262 |
aggtgcattaaaggagggaatgaaacatagctatgtgaaacaatgtgatgatgt |
315 |
Q |
| |
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||| || ||||| || |||||||| |||||||||||||| ||||||||| |||| |
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| T |
41917496 |
aggggctttaaaagaaggaatgaagcatagctatgtgaagcaatgtgatcatgt |
41917549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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