View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_high_30 (Length: 360)
Name: NF1399_high_30
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 169 - 349
Target Start/End: Original strand, 44632988 - 44633168
Alignment:
| Q |
169 |
atgtaagaaattatgattgattaacttggtaaagaaagaaaacatatacataaacgaaaatggaagtaacctgatagccataagcatcaccaaaagaaag |
268 |
Q |
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| T |
44632988 |
atgtaagaaattatgattgattaacttggtaaagaaagaaaacatatacataaacgaaaatggaagtaacctgatagccataagcatcaccaaaagaaag |
44633087 |
T |
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| Q |
269 |
actgatacgatctctagtaaatgagggagaattgcagcttgtggttattgtgaccgtgtatgaacaagagttactctacaa |
349 |
Q |
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| T |
44633088 |
actgatacgatctctagtaaatgagggagaattgcagcttgtggttattgtgaccgtgtatgaacaagagttactctacaa |
44633168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 44632875 - 44632981
Alignment:
| Q |
11 |
cataggtgaatgactaaatcatataaaattaacttaagggacagcataaacagttttgtctttgtttaaatttttatataagattgtgatctcattttta |
110 |
Q |
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| T |
44632875 |
cataggtgaatgactaaatcatataaaattaacttaatggacagcataaacag-----------------tttttatataagattgtgatctcattttta |
44632957 |
T |
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| Q |
111 |
atctttatcatataccattcaatt |
134 |
Q |
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| T |
44632958 |
atctttatcatataacattcaatt |
44632981 |
T |
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