View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_high_31 (Length: 355)
Name: NF1399_high_31
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 34 - 346
Target Start/End: Original strand, 47161540 - 47161838
Alignment:
| Q |
34 |
tcttaacatataatgttcaagatccatttttcatttgatatatatgagattattaacattattgataagtattaatattaataatcttctcccccatcgt |
133 |
Q |
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| T |
47161540 |
tcttaacatataatgttcaacatcaattttttatttgatat--atgagattattaacattattgataagtattaatattaataatcttctcccccaacgt |
47161637 |
T |
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| Q |
134 |
gagtccattcattcttacggatgtgctttccctccatggagatctgataccaaagttggatcatgaagaagatccgaggatcatcgcattggactttgaa |
233 |
Q |
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|||| |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
47161638 |
gagttcattcattcttacgaatgtgctttccctccatagggatctgataccaaagttggatcat----------agagaatcatcgcattggactttgaa |
47161727 |
T |
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| Q |
234 |
caatcacttaagcgaacacgtcacattttgactcaaaacattaacacgttcaattaatggactctctcaccaatttatggactttacaaattaattcacc |
333 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
47161728 |
caatcacttaagtgaacacgtcacattttgactcaaaacattaacacgttcaattaatgga--ctctcaccaattcatggactttacaaattaattcacc |
47161825 |
T |
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