View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1399_high_33 (Length: 346)

Name: NF1399_high_33
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1399_high_33
NF1399_high_33
[»] chr1 (9 HSPs)
chr1 (30-101)||(10495470-10495541)
chr1 (100-147)||(10495577-10495624)
chr1 (256-336)||(10495776-10495856)
chr1 (253-296)||(52429276-52429319)
chr1 (254-296)||(3312054-3312096)
chr1 (256-285)||(12151125-12151154)
chr1 (256-296)||(37506061-37506101)
chr1 (256-296)||(39864048-39864088)
chr1 (256-296)||(40144988-40145028)
[»] chr8 (3 HSPs)
chr8 (30-101)||(29822229-29822299)
chr8 (253-335)||(50750-50832)
chr8 (253-285)||(32678350-32678382)
[»] chr6 (3 HSPs)
chr6 (256-296)||(6801867-6801907)
chr6 (256-296)||(23397754-23397794)
chr6 (308-336)||(34657659-34657687)
[»] chr3 (4 HSPs)
chr3 (256-296)||(44301498-44301538)
chr3 (306-335)||(49830123-49830152)
chr3 (256-296)||(30710586-30710626)
chr3 (253-285)||(37311883-37311915)
[»] scaffold0016 (1 HSPs)
scaffold0016 (253-285)||(76226-76258)
[»] chr7 (1 HSPs)
chr7 (256-296)||(21760129-21760169)
[»] chr5 (2 HSPs)
chr5 (256-296)||(1248740-1248780)
chr5 (304-336)||(37184175-37184207)
[»] chr4 (3 HSPs)
chr4 (256-296)||(25233119-25233159)
chr4 (256-296)||(35380478-35380518)
chr4 (253-285)||(56250386-56250418)
[»] chr2 (2 HSPs)
chr2 (256-296)||(14523508-14523548)
chr2 (256-296)||(45235516-45235556)


Alignment Details
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 10495470 - 10495541
Alignment:
Q  30 gtattttcaattttaactcgattgaatcgttactgctattggaaatcccaaaatttcattttaatatctcta 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10495470 gtattttcaattttaactcgattgaatcgttactgctattggaaatcccaaaatttcattttaatatctcta 10495541  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 10495577 - 10495624
Alignment:
Q  100 taaaggagaccgattctcgatgtacaagattctcaattttcattctct 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10495577 taaaggagaccgattctcgatgtacaagattctcaattttcattctct 10495624  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 10495776 - 10495856
Alignment:
Q  256 aaaataattgtcactttataatatcaatgcgacattgattannnnnnnaaattattatacatttatttattgaatttcatc 336  Q
    |||||||||||||||||||||||||||||| |||  |||||       | ||||||||| |||||||||||||||||||||    
T  10495776 aaaataattgtcactttataatatcaatgcaacaccgattatttttttatattattatatatttatttattgaatttcatc 10495856  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 52429276 - 52429319
Alignment:
Q  253 cttaaaataattgtcactttataatatcaatgcgacattgatta 296  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||    
T  52429276 cttaaaataattgtcactttacaatatcaatgcaacatttatta 52429319  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 3312054 - 3312096
Alignment:
Q  254 ttaaaataattgtcactttataatatcaatgcgacattgatta 296  Q
    |||||||||||||||||||||||||||||| | ||||| ||||    
T  3312054 ttaaaataattgtcactttataatatcaatacaacatttatta 3312096  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 285
Target Start/End: Original strand, 12151125 - 12151154
Alignment:
Q  256 aaaataattgtcactttataatatcaatgc 285  Q
    ||||||||||||||||||||||||||||||    
T  12151125 aaaataattgtcactttataatatcaatgc 12151154  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 37506061 - 37506101
Alignment:
Q  256 aaaataattgtcactttataatatcaatgcgacattgatta 296  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  37506061 aaaataattgtcactttagaatatcaatgcaacatttatta 37506101  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 39864048 - 39864088
Alignment:
Q  256 aaaataattgtcactttataatatcaatgcgacattgatta 296  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  39864048 aaaataattgtcactttacaatatcaatgcaacatttatta 39864088  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 40145028 - 40144988
Alignment:
Q  256 aaaataattgtcactttataatatcaatgcgacattgatta 296  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  40145028 aaaataattgtcactttagaatatcaatgcaacatttatta 40144988  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 29822299 - 29822229
Alignment:
Q  30 gtattttcaattttaactcgattgaatcgttactgctattggaaatcccaaaatttcattttaatatctcta 101  Q
    ||||||||||||||||||| |||| ||||||||||||||| ||||| | |||||||||| |||||| |||||    
T  29822299 gtattttcaattttaactcaattggatcgttactgctatttgaaat-ctaaaatttcatattaataactcta 29822229  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 50750 - 50832
Alignment:
Q  253 cttaaaataattgtcactttataatatcaatgcgacattgattannnnnnnaaattattatacatttatttattgaatttcat 335  Q
    ||||||||||||||||||||| |||||||||||  |||| ||||         |||||||||| |||||||||| ||||||||    
T  50750 cttaaaataattgtcactttagaatatcaatgcagcatttattatctttttccattattatacctttatttattaaatttcat 50832  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 32678350 - 32678382
Alignment:
Q  253 cttaaaataattgtcactttataatatcaatgc 285  Q
    ||||||||||||||||||||| |||||||||||    
T  32678350 cttaaaataattgtcactttaaaatatcaatgc 32678382  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 6801867 - 6801907
Alignment:
Q  256 aaaataattgtcactttataatatcaatgcgacattgatta 296  Q
    |||||||||||||||||||||||||||||| ||||| ||||    
T  6801867 aaaataattgtcactttataatatcaatgcaacatttatta 6801907  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 23397794 - 23397754
Alignment:
Q  256 aaaataattgtcactttataatatcaatgcgacattgatta 296  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  23397794 aaaataattgtcactttagaatatcaatgcaacatttatta 23397754  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 336
Target Start/End: Complemental strand, 34657687 - 34657659
Alignment:
Q  308 tattatacatttatttattgaatttcatc 336  Q
    |||||||||||||||||||||||||||||    
T  34657687 tattatacatttatttattgaatttcatc 34657659  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 44301498 - 44301538
Alignment:
Q  256 aaaataattgtcactttataatatcaatgcgacattgatta 296  Q
    |||||||||||||||||||||||||||||| ||||| ||||    
T  44301498 aaaataattgtcactttataatatcaatgcaacatttatta 44301538  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 49830123 - 49830152
Alignment:
Q  306 attattatacatttatttattgaatttcat 335  Q
    ||||||||||||||||||||||||||||||    
T  49830123 attattatacatttatttattgaatttcat 49830152  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 30710586 - 30710626
Alignment:
Q  256 aaaataattgtcactttataatatcaatgcgacattgatta 296  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  30710586 aaaataattgtcactttagaatatcaatgcaacatttatta 30710626  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 37311883 - 37311915
Alignment:
Q  253 cttaaaataattgtcactttataatatcaatgc 285  Q
    ||||||||||||||||||||| |||||||||||    
T  37311883 cttaaaataattgtcactttacaatatcaatgc 37311915  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 76226 - 76258
Alignment:
Q  253 cttaaaataattgtcactttataatatcaatgc 285  Q
    |||||||||||||||||| ||||||||||||||    
T  76226 cttaaaataattgtcactctataatatcaatgc 76258  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 21760169 - 21760129
Alignment:
Q  256 aaaataattgtcactttataatatcaatgcgacattgatta 296  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  21760169 aaaataattgtcactttagaatatcaatgcaacatttatta 21760129  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 1248780 - 1248740
Alignment:
Q  256 aaaataattgtcactttataatatcaatgcgacattgatta 296  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  1248780 aaaataattgtcactttagaatatcaatgcaacatttatta 1248740  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 37184207 - 37184175
Alignment:
Q  304 aaattattatacatttatttattgaatttcatc 336  Q
    ||||||||||| |||||||||||||||||||||    
T  37184207 aaattattatatatttatttattgaatttcatc 37184175  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 25233119 - 25233159
Alignment:
Q  256 aaaataattgtcactttataatatcaatgcgacattgatta 296  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  25233119 aaaataattgtcactttagaatatcaatgcaacatttatta 25233159  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 35380518 - 35380478
Alignment:
Q  256 aaaataattgtcactttataatatcaatgcgacattgatta 296  Q
    ||||||||||||||||||||||| |||||| ||||| ||||    
T  35380518 aaaataattgtcactttataataccaatgcaacatttatta 35380478  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 56250418 - 56250386
Alignment:
Q  253 cttaaaataattgtcactttataatatcaatgc 285  Q
    ||||||||||||||||||||| |||||||||||    
T  56250418 cttaaaataattgtcactttagaatatcaatgc 56250386  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 14523548 - 14523508
Alignment:
Q  256 aaaataattgtcactttataatatcaatgcgacattgatta 296  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  14523548 aaaataattgtcactttagaatatcaatgcaacatttatta 14523508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 45235516 - 45235556
Alignment:
Q  256 aaaataattgtcactttataatatcaatgcgacattgatta 296  Q
    ||||||||||||||||||||||| |||||| ||||| ||||    
T  45235516 aaaataattgtcactttataataccaatgcaacatttatta 45235556  T

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