View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_high_38 (Length: 312)
Name: NF1399_high_38
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_high_38 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 9966393 - 9966669
Alignment:
| Q |
19 |
atcccaaactccaccgttcatctttcttataccatgcatgaaataatacccatataaacacaaatcttgaacacaccatttccacaaaactaccaaaatg |
118 |
Q |
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| T |
9966393 |
atcccaaactccaccgttcatctttcttataccatgcatgaaataatacacatataaacacaaatcttaaacataccatttccacaaaactaccaaaatg |
9966492 |
T |
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| Q |
119 |
gtcactgttagaaaacttatagtagaagtaatagatgcacaaaacctagctcccaaggacggtcatggaacttcaagtccgtacatagtagttgatttct |
218 |
Q |
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| T |
9966493 |
gccactgttagaaaacttatagtagaagtaatagatgcacaaaacctagctcccaaggacggtcatggaacttcaagtctgtacatagtagttgatttct |
9966592 |
T |
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| Q |
219 |
acggtcaaagaagaaaaactcgaaccttggttcgcaacttgaacccggtttggaatgaaacattgtcgtttaatgtt |
295 |
Q |
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| T |
9966593 |
acggtcaaagaagaaaaactcgaaccttggttcgcgacttgaacccggtttggaatgaaacattgtcgtttaatgtt |
9966669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 9936229 - 9936500
Alignment:
| Q |
19 |
atcccaaactccaccgttcatctttcttataccatgcatgaaataatacccatataaacacaaatcttgaacacaccatttccacaaaactaccaaaatg |
118 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
9936229 |
atcccaaactccaccgtt-----ttcttataccatgcatgaaataatacacatataaacacaaaccttaaacacaccatttccacaaaactaccaaaatg |
9936323 |
T |
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| Q |
119 |
gtcactgttagaaaacttatagtagaagtaatagatgcacaaaacctagctcccaaggacggtcatggaacttcaagtccgtacatagtagttgatttct |
218 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
9936324 |
gccactgttagaaaacttatagtagaagtaatagatgcacaaaacctagctcccaaggacggtcatggaacttcaagtccatacatagtaattgatttcc |
9936423 |
T |
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| Q |
219 |
acggtcaaagaagaaaaactcgaaccttggttcgcaacttgaacccggtttggaatgaaacattgtcgtttaatgtt |
295 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9936424 |
acggtcaaagaagaaaaactcgaaccttggttcgcgacttgaacccggtttggaatgaaacattgtcatttaatgtt |
9936500 |
T |
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