View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1399_high_39 (Length: 312)
Name: NF1399_high_39
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_high_39 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 57 - 312
Target Start/End: Original strand, 39984552 - 39984807
Alignment:
| Q |
57 |
catcatcatcatctgctgcagcgcccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatctt |
156 |
Q |
| |
|
||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |
|
|
| T |
39984552 |
catcatcatcaccgggagcagcacccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacaccttcaagttccttcatctt |
39984651 |
T |
|
| Q |
157 |
gtcctcaaactcatctgcctctgcaagctggttagcatctagccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagc |
256 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||| |
|
|
| T |
39984652 |
gtcctcaaactcatcagcctctgcaagctggttggcatctagccactggatagcagcctcaatggtgtcctcgatcttctttttgtcatccgaatcaagc |
39984751 |
T |
|
| Q |
257 |
tttcctgcaatcttgtcatccttaattgtgttcctcatgttgtatgcataattttc |
312 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
39984752 |
tttcctgcaattttttcatccttaatggtgttcctcatgttgtatgcatagttttc |
39984807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 98 - 300
Target Start/End: Complemental strand, 8018634 - 8018432
Alignment:
| Q |
98 |
ccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatcta |
197 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| | || || | |||||||||||| || ||||||||||| |||||||| | ||||||| || | |
|
|
| T |
8018634 |
ccaccttgatacatcttggcaatgattgggttgcaaaggctctcaagttccttcatcttatcttcaaactcatcagcctctgccaactggttactgtcca |
8018535 |
T |
|
| Q |
198 |
gccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatccttaattgtgttcctcatgtt |
297 |
Q |
| |
|
|||||| || ||||| ||||| | || ||||||||||| ||||| || | ||||||| ||||||| || || |||||||||||||||||||| |
|
|
| T |
8018534 |
accactgaattgcagcgtcaattgcatcatcaatcttctttttgtcctcaggtgaaagctttgaaccaatcttctcgtctttaattgtgttcctcatgtt |
8018435 |
T |
|
| Q |
298 |
gta |
300 |
Q |
| |
|
||| |
|
|
| T |
8018434 |
gta |
8018432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 243
Target Start/End: Original strand, 8101614 - 8101759
Alignment:
| Q |
98 |
ccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatcta |
197 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |||| | || | |||||||||||||| ||||||||||| || || ||||||||||| ||||| | |
|
|
| T |
8101614 |
ccaccttggtacatctttgcaatgattgggttacagattgtctcaagctccttcatcttgtcttcaaactcatcggcttcagcaagctggtttgcatcaa |
8101713 |
T |
|
| Q |
198 |
gccactggatagcagcctcaatggtgtcctcaatcttcttcttgtc |
243 |
Q |
| |
|
|||| || || || ||||||| | |||||||||| ||||||||| |
|
|
| T |
8101714 |
gccattgaatggctccctcaattgcatcctcaatctgcttcttgtc |
8101759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 81 - 301
Target Start/End: Complemental strand, 17706911 - 17706694
Alignment:
| Q |
81 |
ccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgc |
180 |
Q |
| |
|
||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17706911 |
ccatgccaagaccagcaccaccttggtacatcttggcaatgatagggttgcagacaccttctggttccttcatcttgtcctcaaactcatctgcctctgc |
17706812 |
T |
|
| Q |
181 |
aagctggttagcatctagccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatcctta |
280 |
Q |
| |
|
|||||| || || ||||||||| |||||| |||||||||||||||||||| | |||||||| | |||||||||||||||||||||||| ||||||||| |
|
|
| T |
17706811 |
aagctgattggcgtctagccaccggatagtagcctcaatggtgtcctcaa---ttttcttgtctttggaatcaagctttcctgcaatcttttcatcctta |
17706715 |
T |
|
| Q |
281 |
attgtgttcctcatgttgtat |
301 |
Q |
| |
|
|| |||| |||| |||||||| |
|
|
| T |
17706714 |
atggtgtccctcgtgttgtat |
17706694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 57 - 301
Target Start/End: Complemental strand, 17649568 - 17649328
Alignment:
| Q |
57 |
catcatcatcatctgctgcagcgcccatgtcaggacctgcaccaccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatctt |
156 |
Q |
| |
|
||||||||||| ||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||| |
|
|
| T |
17649568 |
catcatcatcacctggagcggcatccatgtcaagacctgcaccaccttggtacatcttggcaatgatagggttgccgacacctcgcggttccttcatctt |
17649469 |
T |
|
| Q |
157 |
gtcctcaaactcatctgcctctgcaagctggttagcatctagccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagc |
256 |
Q |
| |
|
||||||||||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||| |
|
|
| T |
17649468 |
atcctcaaactcatctgcctattcaagctggtt-gggtctagccactggatagcagcctcaatggtgtcctcaa---tcttcttgtctttggaatcaagc |
17649373 |
T |
|
| Q |
257 |
tttcctgcaatcttgtcatccttaattgtgttcctcatgttgtat |
301 |
Q |
| |
|
|||| ||||||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
17649372 |
tttcatgcaatcttttcatcattaatggtgttcctcatgttgtat |
17649328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 23597805 - 23597721
Alignment:
| Q |
99 |
caccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaag |
183 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||| | || |||| |||||||||||||||||||| ||||| |||||| |||| |
|
|
| T |
23597805 |
caccttgatacatccttgcaatgatagggttgcaaataccctccagctccttcatcttgtcctcaaattcatcagcctctccaag |
23597721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 306
Target Start/End: Complemental strand, 23588953 - 23588746
Alignment:
| Q |
99 |
caccttggtacatcttggcaatgatagggttgcagacactttccaattccttcatcttgtcctcaaactcatctgcctctgcaagctggttagcatctag |
198 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||| | | |||| |||||||||||||||||||| ||||| |||||| |||| || || |||| | |
|
|
| T |
23588953 |
caccttgatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaa |
23588854 |
T |
|
| Q |
199 |
ccactggatagcagcctcaatggtgtcctcaatcttcttcttgtcatcggaatcaagctttcctgcaatcttgtcatccttaattgtgttcctcatgttg |
298 |
Q |
| |
|
||| || ||||| ||||||| | || ||||| |||||||| ||||| | | | ||| ||||||||||| || || |||||||||||||||||| |
|
|
| T |
23588853 |
ccattgaatagccccctcaatagcatcttcaattttcttcttatcatcagcagacaacttcgaagcaatcttgtcgtctttgattgtgttcctcatgttg |
23588754 |
T |
|
| Q |
299 |
tatgcata |
306 |
Q |
| |
|
|| ||||| |
|
|
| T |
23588753 |
taggcata |
23588746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University