View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_high_49 (Length: 268)
Name: NF1399_high_49
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 6685900 - 6685659
Alignment:
| Q |
10 |
ccacagacggcgatattttttattttattgcattttcattattttcgtttnnnnnnnttatcgtaatttcagactaagaag---gtatatatactttttg |
106 |
Q |
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| T |
6685900 |
ccacagacggcgatattttttattttattacattttcattattttcgtttaaaaaaattatcgtaatttcagactaagaagaaggtatatatactttttg |
6685801 |
T |
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| Q |
107 |
ctaaa--------gaatatgagatgaacttttttattgcatttctttaatatcagtttgcaggtcgttactttagttattaaatgtaatgttgaaaggtg |
198 |
Q |
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| T |
6685800 |
ctaaattttacaagaatatgagataaacttttttattgcatttctttaatatcagtttgcaggtcgttactttagttattaaatgtaatgttgaaaggtg |
6685701 |
T |
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| Q |
199 |
ttgcattgagtgggaggacattcacattgttatcacattagt |
240 |
Q |
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| T |
6685700 |
ttgcattgagtgggaggacattcacattgttatgacattagt |
6685659 |
T |
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