View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_high_5 (Length: 547)
Name: NF1399_high_5
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 30 - 376
Target Start/End: Complemental strand, 30668856 - 30668510
Alignment:
| Q |
30 |
ctctaaacagtatcacttacatcgctctcaactcaacatcttttatattagggtcttgctaaccagtgccctcaagtttgtattaagaatcggctatttt |
129 |
Q |
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| T |
30668856 |
ctctaaacactatcgcttacattgctctcaactcaacatcttttatattaggatcttactaatcagtgccctcaaatttgtattaagaattgactatttt |
30668757 |
T |
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| Q |
130 |
caaaattgaaaagatcaactattttgggacaaattttctttaagaaaaggtcaatcattttcgggattgagggaataattcatgaatttgttttcaaatc |
229 |
Q |
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| T |
30668756 |
caaaattgaaaagatcaactattttgggacaaattttctttaagaaaaggtcaatcattttcgggattgagggaataattcatgaatttgttttcaaatc |
30668657 |
T |
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| Q |
230 |
atggtgtggacaatgaggttgaattggtttcaaaacatggtgtggactatgaagatgttattctaagttatactatttctgtctcaaattataaattatt |
329 |
Q |
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| T |
30668656 |
acggtgtggacaatgaggttgaattcgtttcaaaccatggtgtggactatgaagatgttattctaagttatattacttttgtctcaaattataaattatt |
30668557 |
T |
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| Q |
330 |
ttgtnnnnnnnttacaaatgataaatcattttacaatacaaataaaa |
376 |
Q |
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| T |
30668556 |
ttggaaaaaaattacaaatgataaatcattttacaatacaaataaaa |
30668510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 131 - 331
Target Start/End: Complemental strand, 30663191 - 30662974
Alignment:
| Q |
131 |
aaaattgaaaagatcaactattttgggacaaattttctt----taagaaaaggtcaatcattttcgggattgagggaataattcatgaatttgttttcaa |
226 |
Q |
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| T |
30663191 |
aaaaatgaaaagatcaactattttgggacaagttttcttaaaaaaaaaaaaggtcaatcattttcggcgttga-ggaataattcatgaatttgttttcaa |
30663093 |
T |
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| Q |
227 |
atcatggtgtggacaatgaggttgaattggtttcaaaacatggtgtggac--------------tatgaagatgttattctaagttatactatttctgtc |
312 |
Q |
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| T |
30663092 |
atcatggtgttgacagtgagtttgaattggtttcaaatcatggtgtggacaatgtggttgaatatgtgaagatgttattctaagttatacttcctctgtc |
30662993 |
T |
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| Q |
313 |
tcaaattataaattatttt |
331 |
Q |
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| T |
30662992 |
tcaaattataaattatttt |
30662974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 448 - 547
Target Start/End: Complemental strand, 30668438 - 30668340
Alignment:
| Q |
448 |
cccctatcattataaagaataattttgtaaatagtcttatnnnnnnnctatttataaacattaatgaatgatgtatttgaaaaaagagtaataattgcat |
547 |
Q |
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| T |
30668438 |
cccctatcattataaagaataattttgcaaatagtcttataaaaaa-ctatttataaacattaatgaatgatatatttaaaaaaagagtaataattgcat |
30668340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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