View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_high_51 (Length: 265)
Name: NF1399_high_51
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 30 - 254
Target Start/End: Complemental strand, 49627842 - 49627617
Alignment:
| Q |
30 |
gattgttcaaggatgatccccgtaaacctcatttaccaatagtttttacgtgtagaaatattcttctttacatgtttgctggtgaagtaaccacaatact |
129 |
Q |
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| T |
49627842 |
gattgttcaaggatgatccccgtaaacctcatttcccaatagtttttacgtgtagaaatattcttctttagatgtttgctggtgaagtaaccacaatact |
49627743 |
T |
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| Q |
130 |
cacggaaagaacaaagaaaattagacgaggataatgacgcagagagtgaggtggcat-nnnnnnnccagtttatgtgcattgccctcagataattttgat |
228 |
Q |
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| T |
49627742 |
cacggaaagaacaaagaaaattagacgaggataatgacgcagagagtgaagtggcataaaaaaaaccagtttatgtgcattgccctcagataattttgat |
49627643 |
T |
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| Q |
229 |
ttccaatatatccaaaaccagttcat |
254 |
Q |
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|||||||||||||||||||||||||| |
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| T |
49627642 |
ttccaatatatccaaaaccagttcat |
49627617 |
T |
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