View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_high_56 (Length: 251)
Name: NF1399_high_56
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_high_56 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 152 - 251
Target Start/End: Original strand, 44352394 - 44352493
Alignment:
| Q |
152 |
ccataccgtaacaacttatgaaaaagtttctgagcttctaaaacaaacccattttacacaagcacttgaaaatacaaatcgaacacaagagggtgtgaac |
251 |
Q |
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| T |
44352394 |
ccataccgtaacaacttatgaaaaagtttctgagcttctaaaacaaacccattttccacaagcacttgaaaatacaaatcaaacacaagagggtgtgaac |
44352493 |
T |
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Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 44352255 - 44352334
Alignment:
| Q |
13 |
aatattacacgaaactgtattccaacaaacacccaattcaggaaattcctcgaacaccttaaccgcaatcttaatcccct |
92 |
Q |
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| T |
44352255 |
aatattacacgaaactgtattccaacaaacacccaattcaggaaattcctcgaacaccttaaccgcaatcttaatcccct |
44352334 |
T |
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