View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_high_61 (Length: 244)
Name: NF1399_high_61
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_high_61 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 32406012 - 32406241
Alignment:
| Q |
1 |
caattcctgctgctaagccatatcttgtattgtttgcacttttgattgcttcctcaatagtcctatttt-ttattcatgtacttgaattcatcattcatg |
99 |
Q |
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| T |
32406012 |
caattcctgctgctaagccatattttgtattgtttgcacttttgattgcttcctcaatagtcctatttttttattcatgtacttgaattcatcattcatg |
32406111 |
T |
|
| Q |
100 |
aacaaccttactataattacttcaaaaacaacaataataaacaatttggttttggtgctatctgcatcacgcagttttcgatctcaatcgcgcgatctcc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32406112 |
aacaaccttactataattacttcaaaaacaacaataataaacaatttggttttggtggtatctgcatcacgcagttttcgatctcaattgcgcgatctcc |
32406211 |
T |
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| Q |
200 |
aatcaccagttgagatcatttttaactgat |
229 |
Q |
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|||||| ||||||||||||||||||||||| |
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| T |
32406212 |
aatcactagttgagatcatttttaactgat |
32406241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 43621701 - 43621638
Alignment:
| Q |
1 |
caattcctgctgctaagccatatcttgtattgtttgcacttttgattgcttcctcaatagtcct |
64 |
Q |
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|||| |||||||||| |||||||||||||| || ||||| || |||||||||||||||||||| |
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| T |
43621701 |
caatacctgctgctagtccatatcttgtattattagcactcttaattgcttcctcaatagtcct |
43621638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 43628153 - 43628090
Alignment:
| Q |
1 |
caattcctgctgctaagccatatcttgtattgtttgcacttttgattgcttcctcaatagtcct |
64 |
Q |
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|||| |||||||||| ||||||||| |||||||| ||||| || || ||||||||||||||||| |
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| T |
43628153 |
caatgcctgctgctaggccatatctggtattgttggcactcttaatggcttcctcaatagtcct |
43628090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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